Sequence bin for 9SE

Contig summary statistics

Contigs
45
Total length
2,505,680
Minimum length
305
Maximum length
568,373
Mean length
55,682
N50
165,065
L50
5
N90
47,307
L90
18
N95
22,657
L95
21

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
128308Illumina9SP_contig_1 length 568373 coverage 356.9 normalized_cov 0.96568373SE0760 133450 EMBL GBK
SE0761 8231683
SE0762 18882370
SE0763 23573484
SE0764 34854189
SE0765 41894449
SE0766 44515122
SE0767 51157304
SE0769 87609791
SE0770 979110357
SE0771 1037411852
SE0774 1405115454
SE0777 1875318887
SE0778 1903920331
SE0779 2063721809
SE0780 2186922408
SE0781 2256422830
SE0788 3101031228
SE0793 3541536716
x_5 3575336088
SE0794 3672138127
SE0796 3884639385
SE0797 3939740491
SE0800 4210243175
SE0804 4692547536
SE0806 4908849279
SE0810 5235852840
SE0811 5298553260
SE0816 6102661487
SE0817 6192962981
SE0818 6300263436
SE0822 6535965748
SE0823 6581566357
SE0826 6850869062
BACT000061 (rpmF) 6914069313
SE0831 7368474742
SE0832 7474277144
SE0834 7838378649
SE0835 7865079171
SE0838 8357283886
SE0840 8613586749
SE0845 9107191580
PSM-b3_SERP0736 9221192372
PSM-b2_SERP0737 9243192562
PSM-b1_SERP0738 9261792748
PSM-b1_SERP0738 9261792742
PSM-b1_SERP0738 9280792938
PSM-b1_SERP0738 9280792932
SE0853 9622496655
SE0854 9667097605
SE0857 100516101481
SE0862 107376108167
SE0865 109480109770
SE0873 118289118816
SE0875 119049120356
SE0877 121281122558
SE0878 122559123659
SE0879 123652126825
SE0882 128172128396
SE0883 128934129341
Fbe_SERP0775 129406131100
SE0885 131370131993
SE0889 136458136661
SE0890 136883137371
SE0893 139603140697
SE0896 143741144631
SE0898 145281145916
SE0899 145999146187
BACT000057 (rpmB) 145999146187
SE0900 146545146919
SE0911 160431160763
BACT000016 (rpsP) 162469162744
SE0915 163374164111
BACT000048 (rplS) 164217164567
SE0916 164217164567
SE0921 170622171485
SE0922 171490172260
SE0924 173556174464
SE0928 179951180841
SE0929 180845181387
BACT000002 (rpsB) 184015184803
SE0932 184015184803
SE0934 185974186696
SE0939 190583192286
SE0941 197025197492
SE0943 198754199038
SE0944 199038199355
SE0947 201825202175
SE0949 203246204217
BACT000015 (rpsO) 204337204606
SE0950 204337204606
SE0954 211546212259
SE0955 212290213561
SE0956 213561214850
SE0957 214847215551
SE0959 216550216942
SE0960 216971217552
SE0964 220591222150
SE0965 222239222454
SE0967 223525225285
SE0968 225286226152
SE0969 226738227355
SE0970 227412227702
SE0972 229591229956
SE0973 229980230474
SE0975 233308235245
SE0978 237145238644
SE0979 238821240494
SE0981 241656242654
SE0982 242608242847
SE0996 252908253105
SE1009 263344264624
BACT000062 (rpmG) 271720271869
BACT000014 (rpsN) 272035272304
SE1023 275592275825
SE1026 278649278876
SE1033 289409289876
SE1035 290467291075
SE1047 306567307655
SE1049 309717310283
SE1057 315745316998
SE1061 320994321770
SE1066 326245326892
SE1067 326899327774
SE1076 337962338684
x_6 346559346867
SE1092 352622353413
SE1094 353819354628
SE1095 354823355002
SE1110 370832371905
SE1111 371923372426
SE1114 374582374806
SE1115 374806375306
SE1124 381454381714
SE1125 381726381920
SE1133 420077421213
SE1134 421856422194
SE1137 423459424088
SE1141 427492428178
SE1147 435731436048
SE1156 443449443928
SE1158 444999445724
SE1160 446765447037
SE1163 448227449537
BACT000001 (rpsA) 449753450931
SE1172 458392458640
SE1179 464050464850
SE1181 465456466343
SE1182 466386466835
SE1183 466940467482
SE1187 470480471400
SE1190 473500474390
SE1192 476478477884
SE1194 479466480443
SE1197 482430483413
SE1198 483406484404
SE1203 489418489648
SE1204 489641490978
SE1206 491458491820
SE1207 491832493190
SE1213 498179498736
SE1214 498763499824
SE1217 500778501608
SE1224 507222507734
SE1227 508594509043
SE1228 509021509347
SE1234 513361513561
BACT000062 (rpmG) 515740515889
SE1240 518485519084
SE1241 519497519916
SE1246 524082525182
SE1247 525172525861
SE1254 533460534359
SE1257 535121535588
SE1261 538525539235
SE1262 540081540257
BACT000021 (rpsU) 540081540257
SE1263 540383541738
SE1264 541735542496
SE1268 546582547214
SE1269 547243548220
BACT000020 (rpsT) 551679551930
SE1278 557283557636
SE1279 557637558221
SE1284 560999561526
SE1285 561546562232
128299Illumina9SP_contig_2 length 204398 coverage 377.8 normalized_cov 1.01204398SE0284 15231984 EMBL GBK
SE0285 20052568
SE0286 25583565
SE0291 1124511886
SE0292 1187013270
SE0293 1326313661
SE0294 1365114418
SE0295 1441514942
BACT000062 (rpmG) 1571115854
SE0298 1591716099
SE0299 1611016658
BACT000040 (rplK) 1699017412
SE0301 1762518320
BACT000030 (rplA) 1762518320
SE0303 1859519095
BACT000039 (rplJ) 1859519095
SE0304 1913319501
BACT000036 (rplL) 1913319501
SE0307 2420027823
SE0308 2815128411
BACT000012 (rpsL) 2850228915
BACT000007 (rpsG) 2898629456
SE0310 2898629456
fusA 2957631657
SE0312 3187633060
SE0318 3860839684
SE0325 4703147693
SE0326 4768648348
SE0337 5790258780
SE0338 5879459459
SE0342 6159662144
SE0347 6550965871
SE0348 6587566135
SE0359 7583576824
SE0361 7837079290
SE0362 7929580278
SE0363 8029181367
SE0369 8628587583
SE0373 9020691042
SE0374 9105392321
SE0384 99985100929
SE0386 101694102491
SE0388 103448104167
SE0395 108674108898
SE0396 108914109120
SE0401 114488114970
SE0405 118931119860
SE0406 119857120693
SE0418 130059131786
SE0424 138215139267
SE0425 139828140334
SE0426 140443141366
SE0427 141385142059
SE0429 143238143999
SE0433 148235149035
SE0437 153270153986
SE0438 153986154462
SE0439 154773155447
SE0441 156784156969
SE0442 157252157851
SE0448 162285162581
SE0450 163554164120
SE0454 166209167081
SE0459 171523172449
SE0471 181975182895
SE0477 189241190347
SE0480 192136192609
SE0485 194899195612
SE0487 196037196708
SE0488 197005197592
SE0490 198735199343
SE0491 199392199598
SE0492 199617200348
SE0493 200336201340
128315Illumina9SP_contig_3 length 176538 coverage 354.4 normalized_cov 0.95176538SE1295 13482616 EMBL GBK
SE1296 26343557
SE1298 46244932
SE1300 53775637
SE1305 1304314185
SE1306 1436515423
SE1308 1595216374
SE1313 2273023605
SE1314 2360224054
SE1317 2677827296
SE1321 3296633226
SE1322 3324234381
SE1325 3644737049
SE1326 3706237526
BACT000056 (rpmA) 3896739251
SE1328 3896739251
SE1329 3926339583
BACT000050 (rplU) 3958839896
SE1335 4265942838
SE1338 4447345738
SE1340 4872249282
SE1344 5319453874
SE1351 6094861871
SE1353 6291763273
BACT000049 (rplT) 6291763273
BACT000064 (rpmI) 6332563525
SE1354 6332563525
SE1356 6428865790
SE1358 6850969429
SE1361 7179072815
SE1366 7428675158
SE1369 7979680506
SE1373 8534187098
SE1379 9492295860
SE1381 9739097803
SE1384 100084101199
SE1388 103826104773
SE1389 104902105396
x_7 106083106445
SE1391 106442107665
SE1392 107665108813
SE1395 111506111622
BACT000004 (rpsD) 111654112256
SE1396 111654112256
SE1402 116745117869
SE1404 119647120270
SE1406 121979123244
SE1409 126730127719
SE1410 127975129066
SE1412 130802131293
SE1413 131368132681
SE1422 140467141267
SE1424 142497143906
SE1430 160400160711
SE1432 163443164657
SE1433 164764165717
SE1440 171402172040
SE1441 172041173084
SE1442 173520175013
SE1443 175352176203
128326Illumina9SP_contig_4 length 174923 coverage 373.0 normalized_cov 1.00174923SE2315 1560016385 EMBL GBK
SE2316 1689817284
SE2321 2214022799
SE2328 2887729605
x_16 3063530883
SE2330 3092531293
PSM-a_SERP0083 3608336148
PSM-d_SERP0082 3619636306
SE2334 3655836821
SE2348 5497656442
SE2349 5648057748
SE2350 5774858326
SE2351 5892359330
SE2352 5945860123
SE2354 6146062848
SE2357 6509065659
SE2358 6567467197
SE2365 6964770312
SE2368 7122971489
BACT000018 (rpsR) 8685187093
BACT000006 (rpsF) 8767087966
SE2372 8767087966
SE2373 8835189160
ychF 8965790754
SE2377 9099091865
SE2378 9202092862
SE2379 9359194694
SE2384 100884102068
SE2398 119613120257
SE2399 120273120674
SE2402 123620123811
SE2403 123883125937
SE2405 127577128773
SE2411 132916133311
gidA 135689137566
SE2418 139164139511
SE2419 139670139807
BACT000063 (rpmH) 139670139807
SE0002 142210143343
x_1 143776144012
SE0003 144009145124
SE0004 145135147066
SE0007 151837153123
SE0010 155710156039
SE0014 160464160910
BACT000038 (rplI) 160464160910
SE0022 170385171185
128336Illumina9SP_contig_5 length 165065 coverage 381.7 normalized_cov 1.02165065SE2253 50875902 EMBL GBK
SE2254 58996699
SE2255 67017474
SE2258 1042611961
IcaR_SERP2292 1467915233
IcaD_SERP2294 1660016902
IcaB_SERP2295 1690217768
IcaC_SERP2296 1775818822
SE0271 2697227586
SE0262 3592236884
SE0259 3847340083
SE0254 4384644799
SE0249 5031050813
SE0247 5276054163
SE0244 5693657559
SE0238 7238372757
SE0237 7276173336
SE0234 7577776742
SE0230 7854778771
SE0224 8467185630
SE0219 8905389955
SE0216 9280194018
SE0210 9912399872
SE0183 124659124982
PSM-b1_A0A0Q0WMS6 129275129424
PSM-b1_A0A0Q0WMS6 134572134721
SE0156 147406148386
128309Illumina9SP_contig_6 length 116785 coverage 466.4 normalized_cov 1.25116785SE0759 38434967 EMBL GBK
SE0758 49676955
SE0757 69457550
AtlE_SERP0636 1409118095
SE0744 2319124864
SE0729 7743777655
SE0727 7892479109
SE0726 7911579717
SE0719 8748987734
SE0718 8772489208
SE0717 8972990904
SE0716 9088292075
SE0713 9395095068
x_4 9415394461
SE0697 107683108537
SE0695 109357109992
SE0694 110009110356
SE0692 111234111677
SE0690 112960114768
128312Illumina9SP_contig_7 length 110029 coverage 358.8 normalized_cov 0.96110029SE1548 26173906 EMBL GBK
SE1549 42135307
SE1550 54677203
SE1551 74457987
SE1552 80949137
SE1553 931810292
SE1561 1618616347
SE1562 1650617648
SE1565 1963819853
SE1566 1999420458
SE1567 2046620750
SE1569 2239223021
SE1570 2301124057
SE1571 2405424755
SE1575 2738027916
SE1576 2835729082
SE1579 3130831862
SE1585 3802439481
SE1586 3948339785
SE1589 4325345250
SE1591 4744048132
SE1592 4845648758
SE1594 5059050781
SE1595 5075351379
SE1596 5145352280
SE1624 6939770311
SE1625 7031170688
SdrH_SERP1487 7775779082
Hld_SERP1489 8060380677
Hld_SERP1489 8060480675
SE1640 8478686258
SE1645 8927689500
SE1647 9111091745
SE1648 9209394027
SE1649 9436995985
SE1651 9708797548
SE1652 9752198183
SE1653 9816498625
x_8 9956299903
x_9 100369100626
SE1656 102551102784
SE1661 107890108459
128332Illumina9SP_contig_8 length 101897 coverage 376.4 normalized_cov 1.01101897SE2076 10791690 EMBL GBK
SE2066 1183012879
SE2063 1524317207
SE2062 1738117995
SE2061 1810319101
SE2060 1910319870
SE2059 1987220072
SE2055 2386324153
SE2053 2630526718
SE2046 3254833228
SE2045 3325234793
SE2038 4455444745
SE2032 5179252610
SE2031 5277352961
SE2030 5297854054
SE2024 5852459300
SE2014 6992570626
SE2013 7063071088
SE2010 7416175561
SE1996 9109391980
SE1995 9225692942
SE1993 9344794235
128321Illumina9SP_contig_9 length 96182 coverage 363.9 normalized_cov 0.9896182x_3 27553012 EMBL GBK
SE0584 30373225
PSM-e 76387709
SE0575 1072310917
SE0563 2250822741
SE0562 2281023268
SE0561 2343424738
SE0559 2639727158
SE0558 2728928479
SE0557 2867329683
SE0556 2973530748
SE0551 3438134965
SE0548 3736138269
SE0547 3844539377
SE0545 4084841384
SE0544 4138142220
SE0543 4222643158
SE0538 4913649777
SE0535 5253855072
SE0531 5844159307
SE0530 5945260093
SE0528 6157362649
SE0526 6362164115
SE0524 6549366623
SE0519 6996870282
SE0517 7155572334
SE0512 7765178049
SE0511 7880479679
SE0505 8663587174
SE0503 8856090074
SE0501 9124193022
128322Illumina9SP_contig_10 length 88560 coverage 373.2 normalized_cov 1.0088560SE0593 19602502 EMBL GBK
SE0596 36784058
SE0599 46344930
SE0601 62016896
SE0602 69177729
SE0604 83328523
SE0607 1062711934
SE0608 1200213243
SE0609 1323313697
SE0613 1662317648
SE0615 1887619703
SE0617 2119722111
SE0619 2274723013
SE0620 2313223566
SE0623 2576325909
SE0626 2861128847
SE0631 3072231042
SE0634 3285533214
SE0638 3801838392
SE0640 3991040266
SE0641 4024440537
SE0642 4053741016
SE0644 4250142848
SE0645 4284843276
SE0647 4586846248
SE0648 4631446907
SE0649 4720447584
SE0654 5152552769
SE0662 5987560450
SE0677 7807679017
SE0685 8670687695
128295Illumina9SP_contig_11 length 82729 coverage 366.5 normalized_cov 0.9882729SE1747 1015611127 EMBL GBK
SE1739 1589016300
SE1738 1648816934
SE1737 1705817768
SE1736 1797618638
SE1728 2580626603
SE1725 2875030357
SE1723 3132532185
BACT000060 (rpmE) 3739737654
SE1718 3739737654
SE1710 4272043958
SE1707 4593946289
SE1706 4631547043
SE1705 4708647298
SE1704 4739647911
SE1703 4791148450
SE1702 4847349984
SE1701 5006950935
SE1700 5095752369
SE1699 5238952793
x_10 5294253175
SE1697 5458455021
SE1696 5533955779
SE1694 5675357412
SE1692 5837859199
SE1688 6169162344
SE1686 6418464477
SE1682 6507266283
SE1679 6941470943
SE1673 7536975539
SE1671 7624277243
128297Illumina9SP_contig_12 length 81333 coverage 360.8 normalized_cov 0.9781333SE1902 8142115 EMBL GBK
SE1907 65167451
SE1908 76998847
x_12 84988854
SE1911 983310525
SE1921 1756618126
SE1923 1812318443
SE1930 2438725019
x_13 2569925959
SE1941 3517435848
SE1950 4825649248
SE1951 4931249713
SE1952 4978250198
x_14 6090661262
SE1971 6743567887
SE1973 6857769179
SE1976 7455075485
SE1977 7547675790
128316Illumina9SP_contig_13 length 71058 coverage 376.1 normalized_cov 1.0171058SE1835 39735223 EMBL GBK
SE1831 942710335
BACT000010 (rpsJ) 1689917207
SE1825 1689917207
BACT000032 (rplC) 1723517897
BACT000033 (rplD) 1792618549
SE1823 1792618549
BACT000052 (rplW) 1854918824
SE1821 1885319686
BACT000031 (rplB) 1885319686
SE1820 1975320031
BACT000019 (rpsS) 1975320031
BACT000051 (rplV) 2005920412
SE1818 2043621089
BACT000003 (rpsC) 2043621089
BACT000045 (rplP) 2109221526
SE1817 2109221526
SE1816 2151621725
BACT000058 (rpmC) 2151621725
SE1815 2175022013
BACT000017 (rpsQ) 2175022013
SE1813 2203722459
BACT000043 (rplN) 2204422412
SE1814 2204422412
SE1812 2245422771
BACT000053 (rplX) 2245422771
SE1811 2279723336
BACT000034 (rplE) 2279723336
BACT000014 (rpsN) 2335923544
SE1810 2335923544
SE1809 2357523973
BACT000008 (rpsH) 2357523973
BACT000035 (rplF) 2399824534
SE1808 2399824534
SE1807 2456624928
BACT000047 (rplR) 2456624928
SE1806 2494925449
BACT000005 (rpsE) 2494925449
BACT000059 (rpmD) 2546625645
BACT000044 (rplO) 2566226102
SE1804 2566226102
SE1802 2741228059
SE1801 2824728465
SE1800 2849728610
BACT000065 (rpmJ) 2849728610
BACT000013 (rpsM) 2863328998
SE1799 2863328998
BACT000011 (rpsK) 2902129410
SE1798 2902129410
BACT000046 (rplQ) 3044830816
SE1796 3044830816
SE1795 3111131956
SE1793 3280333609
SE1792 3361334416
BACT000042 (rplM) 3467635113
SE1790 3513335525
BACT000009 (rpsI) 3513335525
SE1787 3795038378
SE1785 3892139853
SE1784 3985740834
SE1778 4672247726
SE1775 5018050419
SE1774 5049350993
SE1772 5105453015
SE1771 5311854299
x_11 5729757695
SE1764 6216262476
SE1763 6262962889
SE1757 6802369462
128324Illumina9SP_contig_14 length 62789 coverage 377.7 normalized_cov 1.0162789SE2156 20282918 EMBL GBK
SE2160 68979524
SE2162 1180412250
SE2168 1889020512
SE2170 2093322267
SE2171 2259523131
SE2173 2529725602
SE2174 2592626525
128313Illumina9SP_contig_15 length 55412 coverage 353.0 normalized_cov 0.9555412SE1451 33093674 EMBL GBK
SE1457 58076715
SE1461 1098211458
SE1514 2490125404
SE1516 2664327866
SE1519 2923029601
SE1520 2976730327
SE1522 3165731761
128303Illumina9SP_contig_16 length 50250 coverage 371.7 normalized_cov 1.0050250SE2233 1718317611 EMBL GBK
SE2229 2568326633
x_15 2768227870
SE2210 4784849497
128319Illumina9SP_contig_17 length 48221 coverage 374.1 normalized_cov 1.0048221SE2089 25444148 EMBL GBK
SE2092 53995851
SE2093 58537010
SE2096 89119774
SE2098 1049111543
SE2103 1499416733
SE2104 1678317472
SE2105 1746917861
SE2107 1924519460
SE2110 2174722913
SE2117 2939930268
SE2126 3987340580
SE2130 4412145500
SE2132 4678847852
128298Illumina9SP_contig_18 length 47307 coverage 360.5 normalized_cov 0.9747307SE1889 48315718 EMBL GBK
SE1888 57156767
SE1885 82598948
SE1878 1571616033
SE1874 1819019260
SE1869 2529325616
SE1867 2647027306
SE1866 2730627920
SE1865 2793328622
SE1861 3121431516
SE1856 3563336181
SE1851 3890739578
SE1846 4243843697
SE1845 4369444170
SE1843 4462044853
128310Illumina9SP_contig_19 length 38977 coverage 400.3 normalized_cov 1.0738977SE2299 36504576 EMBL GBK
SE2297 53985745
SE2295 65596807
SE2292 985310626
SE2291 1083311378
SE2290 1137912269
SE2289 1236912632
SE2288 1302513873
SE2286 1473415114
SE2285 1517415482
SE2284 1609117446
SE2283 1759018555
SE2282 1872519384
SE2281 1963720209
SE2280 2020623715
SE2279 2370525246
SE2278 2524326433
SE2277 2643026693
SE2276 2671727118
SE2275 2721227613
SE2273 2918929728
SE2271 3236033241
SE2268 3560235967
SE2267 3596836447
128328 Illumina 9SP_contig_20 length 29723 coverage 452.8 normalized_cov 1.21 29723
128325Illumina9SP_contig_21 length 22657 coverage 370.7 normalized_cov 0.9922657mecA 25224528 EMBL GBK
PSM-mec 68546919
128335Illumina9SP_contig_22 length 21242 coverage 888.1 normalized_cov 2.3821242QacA_JZUL_v1_280003 1236813909 EMBL GBK
128323Illumina9SP_contig_23 length 19398 coverage 360.3 normalized_cov 0.9719398SE2144 920910873 EMBL GBK
SE2143 1098511689
SE2141 1303313851
SE2140 1384414704
128314 Illumina 9SP_contig_24 length 11133 coverage 2785.5 normalized_cov 7.47 11133
128306 Illumina 9SP_contig_25 length 7551 coverage 447.6 normalized_cov 1.20 7551
128318 Illumina 9SP_contig_26 length 7384 coverage 917.1 normalized_cov 2.46 7384
128327 Illumina 9SP_contig_27 length 6608 coverage 395.2 normalized_cov 1.06 6608
128302 Illumina 9SP_contig_28 length 6281 coverage 383.9 normalized_cov 1.03 6281
128305 Illumina 9SP_contig_29 length 4826 coverage 339.2 normalized_cov 0.91 4826
128334 Illumina 9SP_contig_30 length 4177 coverage 956.6 normalized_cov 2.56 4177
128331 Illumina 9SP_contig_31 length 3547 coverage 346.6 normalized_cov 0.93 3547
128330 Illumina 9SP_contig_32 length 3264 coverage 2364.1 normalized_cov 6.34 3264
128301 Illumina 9SP_contig_33 length 3250 coverage 395.6 normalized_cov 1.06 3250
128338 Illumina 9SP_contig_34 length 2453 coverage 472.0 normalized_cov 1.27 2453
128329 Illumina 9SP_contig_35 length 1936 coverage 842.8 normalized_cov 2.26 1936
128337Illumina9SP_contig_36 length 1918 coverage 679.4 normalized_cov 1.821918Acetyltransferase_SERP1586 15231912 EMBL GBK
128294 Illumina 9SP_contig_37 length 1563 coverage 2290.3 normalized_cov 6.14 1563
128311 Illumina 9SP_contig_38 length 1410 coverage 4268.8 normalized_cov 11.44 1410
128307Illumina9SP_contig_39 length 1324 coverage 2204.0 normalized_cov 5.911324IS256-like_SERP0915 1021271 EMBL GBK
128317 Illumina 9SP_contig_40 length 789 coverage 3769.5 normalized_cov 10.10 789
128304 Illumina 9SP_contig_41 length 689 coverage 568.6 normalized_cov 1.52 689
128333 Illumina 9SP_contig_42 length 571 coverage 245.0 normalized_cov 0.66 571
128296 Illumina 9SP_contig_43 length 483 coverage 371.4 normalized_cov 1.00 483
128320 Illumina 9SP_contig_44 length 372 coverage 703.2 normalized_cov 1.89 372
128300 Illumina 9SP_contig_45 length 305 coverage 110.9 normalized_cov 0.30 305