Home About Us Contact What's New Register
Home>Organism>Staphylococcus epidermidis MLST>Isolate information
Help

Full information on isolate NCK_SE0100 (id:725)

Provenance/primary metadata

id
725
isolate
NCK_SE0100
isolation year
2016
world region
Europe
country
France
city
Paris
host
Human
source
blood
infection
commensal
sender
Anne Jamet, INSERM
curator
Auto Tagger
update history
4 updates show details
date entered
2018-10-31
datestamp
2022-12-22

Sequence bin

contigs
124
total length
2,500,604 bp
max length
234,592 bp
mean length
20,167 bp
N50
110,452
L50
8
N90
39,776
L90
22
N95
23,182
L95
27
%GC
31.98
Ns
0
gaps
0
loci tagged
762

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 98%

Analysis performed: 2022-12-27

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: