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Full information on isolate SS_1119 (id:720)

Provenance/primary metadata

id
720
isolate
SS_1119
alias
Epi 102.1
world region
Europe
country
Germany
host
Human
source
Orthopaedic material
infection
Infection
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
8 updates show details
date entered
2017-11-09
datestamp
2022-12-22

Publication (1)

  • Post V, Harris LG, Morgenstern M, Mageiros L, Hitchings MD, Méric G, Pascoe B, Sheppard SK, Richards RG, Moriarty TF (2017). Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. J Clin Microbiol 55:3089-3103

Sequence bin

method
Unknown
contigs
789
total length
2,256,262 bp
max length
33,044 bp
mean length
2,860 bp
N50
6,186
L50
103
N90
1,858
L90
346
N95
1,108
L95
422
%GC
32.63
Ns
30
gaps
3
loci tagged
663

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (warn threshold: 500)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 96%

Analysis performed: 2022-12-27

Schemes and loci

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