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Full information on isolate SS_1118 (id:719)

Provenance/primary metadata

id
719
isolate
SS_1118
alias
Epi 101.1
world region
Europe
country
Germany
host
Human
source
Orthopaedic material
infection
Infection
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
8 updates show details
date entered
2017-11-09
datestamp
2022-12-22

Publication (1)

  • Post V, Harris LG, Morgenstern M, Mageiros L, Hitchings MD, Méric G, Pascoe B, Sheppard SK, Richards RG, Moriarty TF (2017). Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. J Clin Microbiol 55:3089-3103

Sequence bin

method
Unknown
contigs
596
total length
2,191,507 bp
max length
38,767 bp
mean length
3,678 bp
N50
7,596
L50
89
N90
2,058
L90
295
N95
1,384
L95
359
%GC
32.56
Ns
30
gaps
3
loci tagged
660

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (warn threshold: 500)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 96%

Analysis performed: 2022-12-27

Schemes and loci

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