Home About Us Contact What's New
Home>Organism>Staphylococcus epidermidis MLST>Isolate information
Help

Full information on isolate SS_1078 (id:718)

Provenance/primary metadata

id
718
isolate
SS_1078
alias
Epi 159.1
world region
Europe
country
Germany
host
Human
source
Orthopaedic material
infection
Infection
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
9 updates show details
date entered
2017-11-09
datestamp
2022-12-22

Publication (1)

  • Post V, Harris LG, Morgenstern M, Mageiros L, Hitchings MD, Méric G, Pascoe B, Sheppard SK, Richards RG, Moriarty TF (2017). Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. J Clin Microbiol 55:3089-3103

Sequence bin

method
Unknown
contigs
351
total length
2,392,109 bp
max length
44,553 bp
mean length
6,816 bp
N50
15,048
L50
56
N90
4,265
L90
168
N95
2,405
L95
206
%GC
32.24
Ns
66
gaps
6
loci tagged
729

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50N50 too low (warn threshold: 20,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: