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Full information on isolate Epi_157.1 (id:717)

Provenance/primary metadata

id
717
isolate
Epi_157.1
alias
Epi 157.1
world region
Europe
country
Germany
host
Human
source
Orthopaedic material
infection
Infection
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
9 updates show details
date entered
2017-11-09
datestamp
2022-12-22

Publication (1)

  • Post V, Harris LG, Morgenstern M, Mageiros L, Hitchings MD, Méric G, Pascoe B, Sheppard SK, Richards RG, Moriarty TF (2017). Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. J Clin Microbiol 55:3089-3103

Sequence bin

method
Unknown
contigs
546
total length
2,256,628 bp
max length
33,761 bp
mean length
4,134 bp
N50
9,287
L50
70
N90
2,810
L90
236
N95
1,673
L95
287
%GC
32.46
Ns
30
gaps
3
loci tagged
689

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (warn threshold: 500)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 98%

Analysis performed: 2022-12-27

Schemes and loci

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