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Full information on isolate SS_1075 (id:716)

Provenance/primary metadata

id
716
isolate
SS_1075
alias
Epi 156.1
world region
Europe
country
Germany
host
Human
source
Orthopaedic material
infection
Infection
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
8 updates show details
date entered
2017-11-09
datestamp
2022-12-22

Publication (1)

  • Post V, Harris LG, Morgenstern M, Mageiros L, Hitchings MD, Méric G, Pascoe B, Sheppard SK, Richards RG, Moriarty TF (2017). Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. J Clin Microbiol 55:3089-3103

Sequence bin

method
Unknown
contigs
1,009
total length
2,372,807 bp
max length
38,026 bp
mean length
2,352 bp
N50
7,657
L50
87
N90
1,626
L90
331
N95
785
L95
431
%GC
32.43
Ns
470
gaps
47
loci tagged
702

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (fail threshold: 1,000)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 98%

Analysis performed: 2022-12-27

Schemes and loci

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