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Full information on isolate SS_1072 (id:713)

Provenance/primary metadata

id
713
isolate
SS_1072
alias
Epi 153.1
world region
Europe
country
Germany
host
Human
source
Orthopaedic material
infection
Infection
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
9 updates show details
date entered
2017-11-09
datestamp
2022-12-22

Publication (1)

  • Post V, Harris LG, Morgenstern M, Mageiros L, Hitchings MD, Méric G, Pascoe B, Sheppard SK, Richards RG, Moriarty TF (2017). Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. J Clin Microbiol 55:3089-3103

Sequence bin

method
Unknown
contigs
963
total length
2,183,246 bp
max length
38,072 bp
mean length
2,268 bp
N50
4,706
L50
138
N90
1,340
L90
464
N95
823
L95
565
%GC
32.73
Ns
20
gaps
2
loci tagged
604

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (warn threshold: 500)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 98%

Analysis performed: 2022-12-27

Schemes and loci

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