Full information on isolate NCK_SE0016 (id:527)
Provenance/primary metadata
- id
- 527
- isolate
- NCK_SE0016
- isolation year
- 2015
- world region
- Europe
- country
- France
- city
- Paris
- host
- Human
- neonate
- yes
- other strain info
- ST5
- source
- Blood
- infection
- Infection
- MSSE MRSE
- MRSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2017-02-27
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 279
- total length
- 2,604,132 bp
- max length
- 139,571 bp
- mean length
- 9,334 bp
- N50
- 43,446
- L50
- 20
- N90
- 11,118
- L90
- 61
- N95
- 6,259
- L95
- 78
- %GC
- 32.09
- Ns
- 120
- gaps
- 12
- loci tagged
- 748
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 6 (41 isolates) |
Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
test-105 | cgMLST | Single-linkage | 105 | experimental | 6 (41 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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