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Full information on isolate skin 58 (id:485)

Provenance/primary metadata

id
485
isolate
skin 58
isolation year
2012
world region
Europe
country
UK
host
Human
other strain info
ST 54 ; group A
source
Skin
infection
Commensal
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
7 updates show details
date entered
2017-01-09
datestamp
2022-12-22

Publication (1)

  • Harris LG, Murray S, Pascoe B, Bray J, Meric G, Mageiros L, Wilkinson TS, Jeeves R, Rohde H, Schwarz S, de Lencastre H, Miragaia M, Rolo J, Bowden R, Jolley KA, Maiden MC, Mack D, Sheppard SK (2016). Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples. PLoS One 11:e0151240

Sequence bin

method
Unknown
contigs
73
total length
2,552,706 bp
max length
745,267 bp
mean length
34,969 bp
N50
345,178
L50
3
N90
60,378
L90
9
N95
40,058
L95
12
%GC
32.01
Ns
0
gaps
0
loci tagged
769

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental14 (13 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental14 (13 isolates)
Clustering-134cgMLSTSingle-linkage134experimental14 (13 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental14 (13 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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