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Full information on isolate skin 56b (id:484)

Provenance/primary metadata

id
484
isolate
skin 56b
isolation year
2012
world region
Europe
country
UK
host
Human
other strain info
ST 153 ; group A
source
Skin
infection
Commensal
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
7 updates show details
date entered
2017-01-09
datestamp
2022-12-22

Publication (1)

  • Harris LG, Murray S, Pascoe B, Bray J, Meric G, Mageiros L, Wilkinson TS, Jeeves R, Rohde H, Schwarz S, de Lencastre H, Miragaia M, Rolo J, Bowden R, Jolley KA, Maiden MC, Mack D, Sheppard SK (2016). Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples. PLoS One 11:e0151240

Sequence bin

method
Unknown
contigs
90
total length
2,480,140 bp
max length
376,578 bp
mean length
27,558 bp
N50
145,450
L50
7
N90
40,179
L90
19
N95
20,310
L95
24
%GC
32.11
Ns
0
gaps
0
loci tagged
765

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental18 (4 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental18 (4 isolates)
Clustering-134cgMLSTSingle-linkage134experimental18 (4 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental18 (4 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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