Full information on isolate NA21 (id:425)
Provenance/primary metadata
- id
- 425
- isolate
- NA21
- world region
- Europe
- country
- UK
- host
- Human
- other strain info
- ST 35 ; group A
- source
- Nasal
- infection
- Commensal
- sender
- Julien Guglielmini, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2017-01-09
- datestamp
- 2022-12-22
Publication (1)
- Harris LG, Murray S, Pascoe B, Bray J, Meric G, Mageiros L, Wilkinson TS, Jeeves R, Rohde H, Schwarz S, de Lencastre H, Miragaia M, Rolo J, Bowden R, Jolley KA, Maiden MC, Mack D, Sheppard SK (2016). Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples. PLoS One 11:e0151240
Sequence bin
- method
- Unknown
- contigs
- 64
- total length
- 2,406,787 bp
- max length
- 745,278 bp
- mean length
- 37,607 bp
- N50
- 501,913
- L50
- 2
- N90
- 71,645
- L90
- 8
- N95
- 39,961
- L95
- 11
- %GC
- 32.14
- Ns
- 0
- gaps
- 0
- loci tagged
- 768
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 14 (13 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 14 (13 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 14 (13 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 14 (13 isolates) |
Schemes and loci
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Tools
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