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Full information on isolate AU12-03 (id:15)

Provenance/primary metadata

id
15
isolate
AU12-03
world region
Oceania
country
Australia
host
Human
source
Catheter
infection
Infection
other infection info
intravascular catheter
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
9 updates show details
date entered
2016-05-23
datestamp
2022-12-22

Publication (1)

  • Zhang L, Morrison M, Ó Cuív P, Evans P, Rickard CM (2012). Genome sequence of Staphylococcus epidermidis strain AU12-03, isolated from an intravascular catheter. J Bacteriol 194:6639

Sequence bin

method
Unknown
contigs
50
total length
2,406,624 bp
max length
210,685 bp
mean length
48,133 bp
N50
81,766
L50
11
N90
25,580
L90
29
N95
16,381
L95
35
%GC
31.98
Ns
0
gaps
0
loci tagged
761

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental7 (16 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental7 (16 isolates)
Clustering-134cgMLSTSingle-linkage134experimental7 (16 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental7 (16 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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