Export plugins

Export plugins - Jump to: Export | Sequence Export


Summary: Export dataset generated from query results

The Export plugin creates a download file of any primary metadata, secondary metadata, allele designations, scheme designations, or publications for isolates within a selected dataset or for the whole database. The output file is in Excel format.

Documentation bigsdb.readthedocs.io

Launch 'Export'

Sequence Export

Summary: Export concatenated allele sequences in XMFA and FASTA formats

This plugin creates concatenated XMFA and FASTA files of selected loci for a particular dataset. These sequences can optionally be aligned, using either MAFFT or MUSCLE, facilitating quick analysis of the outputs in third-party phylogenetic analysis packages.

Documentation bigsdb.readthedocs.io

Launch 'Sequence Export'