iTOL - Interactive Tree of Life - Escherichia coli Pasteur MLST

This plugin uploads data for analysis within the Interactive Tree of Life online service:

iTOL is developed by: Ivica Letunic (1) and Peer Bork (2,3,4)

  1. Biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany
  2. European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
  3. Max Delbrück Centre for Molecular Medicine, 13125 Berlin, Germany
  4. Department of Bioinformatics, Biocenter, University of Würzburg, 97074 Würzburg, Germany

Web site:
Publication: Letunic & Bork (2021) Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Res 49(W1):W293-6.

This tool will generate neighbor-joining trees from concatenated nucleotide sequences. Only DNA loci that have a corresponding database containing allele sequence identifiers, or DNA and peptide loci with genome sequences, can be included. Please check the loci that you would like to include. Alternatively select one or more schemes to include all loci that are members of the scheme.

Analysis is limited to 2,000 records or 100,000 sequences (records x loci).

User genomes

Optionally include data not in the

Upload assembly FASTA file
(or zip file containing multiple
FASTA files - one per genome):

iTOL datasets

Select to create data overlays

iTOL data type