Genome Comparator

Please select the required isolate ids and loci for comparison - use CTRL or SHIFT to make multiple selections in list boxes. In addition to selecting individual loci, you can choose to include all loci defined in schemes by selecting the appropriate scheme description. Alternatively, you can enter the accession number for an annotated reference genome and compare using the loci defined in that.

User genomes

Optionally include data not in the

Upload assembly FASTA file
(or zip file containing multiple
FASTA files - one per genome):

Include in identifiers
Annotated reference genome Enter accession number:

or upload Genbank/EMBL/FASTA file:
Parameters / options
Distance matrix calculation With incomplete loci:

  • Aligner:
Core genome analysis
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