Home About Us Contact What's New
Home>Organism>Escherichia coli Pasteur MLST>Isolate info>Sequence bin
Help

Sequence bin for E.coli 106

Contig summary statistics

Contigs
104
Total length
4,953,819
Minimum length
304
Maximum length
391,161
Mean length
47,633
N50
133,542
L50
12
N90
32,404
L90
35
N95
24,511
L95
43

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
200932IlluminaNODE_1_covk_21.345879_covr_61.544_cutoff_34391161pabB (pabB) 295742296209 ← EMBL GBK
200929 Illumina NODE_2_covk_21.774490_covr_62.838_cutoff_34 374610
200869IlluminaNODE_3_covk_21.756404_covr_62.590_cutoff_34242147trpA (trpA) 9036590925 ← EMBL GBK
trpB (trpB) 9110591698 ←
200958 Illumina NODE_4_covk_21.550773_covr_62.159_cutoff_34 191610
200900 Illumina NODE_5_covk_21.644649_covr_62.470_cutoff_34 185710
200874 Illumina NODE_6_covk_21.754000_covr_62.706_cutoff_34 179904
200915 Illumina NODE_7_covk_21.905072_covr_63.234_cutoff_34 174357
200943IlluminaNODE_8_covk_21.662185_covr_62.538_cutoff_34168102putP (putP) 153701154156 → EMBL GBK
200904 Illumina NODE_9_covk_21.677571_covr_62.532_cutoff_34 162879
200868 Illumina NODE_10_covk_21.085339_covr_60.797_cutoff_34 146925
200862 Illumina NODE_11_covk_21.805650_covr_62.950_cutoff_34 136420
200942 Illumina NODE_12_covk_21.239600_covr_61.355_cutoff_34 133542
200873IlluminaNODE_13_covk_21.789853_covr_62.729_cutoff_34130950uidA (uidA) 9530195900 → EMBL GBK
200934 Illumina NODE_14_covk_21.782888_covr_62.942_cutoff_34 130299
200912IlluminaNODE_15_covk_21.977304_covr_63.456_cutoff_34127921polB (polB) 8525185700 → EMBL GBK
200863 Illumina NODE_16_covk_22.029694_covr_63.633_cutoff_34 127734
200918 Illumina NODE_17_covk_21.125389_covr_60.832_cutoff_34 127199
200889 Illumina NODE_18_covk_21.513945_covr_62.147_cutoff_34 118063
200891IlluminaNODE_19_covk_21.769885_covr_62.727_cutoff_34114542dinB (dinB) 1127711726 → EMBL GBK
200870 Illumina NODE_20_covk_21.440683_covr_61.801_cutoff_34 111231
200901IlluminaNODE_21_covk_21.714279_covr_62.440_cutoff_34104715icdA (icdA) 59726487 ← EMBL GBK
200879 Illumina NODE_22_covk_21.712650_covr_62.596_cutoff_34 95279
200895 Illumina NODE_23_covk_21.596417_covr_62.276_cutoff_34 91810
200884 Illumina NODE_24_covk_21.234897_covr_61.448_cutoff_34 85843
200936 Illumina NODE_25_covk_21.743321_covr_62.861_cutoff_34 85778
200931 Illumina NODE_26_covk_21.141667_covr_60.572_cutoff_34 74908
200887 Illumina NODE_27_covk_21.843857_covr_62.991_cutoff_34 72584
200897 Illumina NODE_28_covk_21.404354_covr_61.789_cutoff_34 72177
200937 Illumina NODE_29_covk_21.148789_covr_61.036_cutoff_34 57637
200907 Illumina NODE_30_covk_21.749592_covr_62.708_cutoff_34 54690
200861 Illumina NODE_31_covk_20.427183_covr_59.047_cutoff_34 52271
200896 Illumina NODE_32_covk_22.066091_covr_63.614_cutoff_34 42707
200944 Illumina NODE_33_covk_21.753288_covr_62.702_cutoff_34 41913
200908 Illumina NODE_34_covk_20.121279_covr_58.467_cutoff_34 38193
200872 Illumina NODE_35_covk_21.762018_covr_62.512_cutoff_34 32404
200940 Illumina NODE_36_covk_22.024422_covr_63.532_cutoff_34 32038
200888 Illumina NODE_37_covk_20.796195_covr_59.671_cutoff_34 31585
200921 Illumina NODE_38_covk_21.949814_covr_63.243_cutoff_34 30984
200963 Illumina NODE_39_covk_20.775386_covr_59.890_cutoff_34 30391
200946 Illumina NODE_40_covk_20.127361_covr_57.875_cutoff_34 29268
200890 Illumina NODE_41_covk_22.005524_covr_63.499_cutoff_34 28702
200924 Illumina NODE_42_covk_21.506976_covr_61.803_cutoff_34 28696
200914 Illumina NODE_43_covk_21.914960_covr_63.171_cutoff_34 24511
200933 Illumina NODE_44_covk_20.669752_covr_59.423_cutoff_34 20735
200881 Illumina NODE_45_covk_19.521843_covr_55.926_cutoff_34 19419
200919 Illumina NODE_46_covk_21.045804_covr_60.320_cutoff_34 17019
200947 Illumina NODE_47_covk_20.088224_covr_57.339_cutoff_34 15571
200930 Illumina NODE_48_covk_22.215327_covr_65.745_cutoff_34 12443
200892 Illumina NODE_49_covk_21.363741_covr_60.781_cutoff_34 12256
200906 Illumina NODE_50_covk_18.382746_covr_52.604_cutoff_34 11911
200928 Illumina NODE_51_covk_21.636297_covr_61.731_cutoff_34 10976
200953 Illumina NODE_52_covk_20.685570_covr_58.938_cutoff_34 9039
200922 Illumina NODE_53_covk_21.279840_covr_60.705_cutoff_34 8829
200910 Illumina NODE_54_covk_19.885202_covr_56.924_cutoff_34 7242
200894 Illumina NODE_55_covk_21.528717_covr_60.688_cutoff_34 6280
200903 Illumina NODE_56_covk_19.445171_covr_54.600_cutoff_34 4996
200883 Illumina NODE_57_covk_21.971861_covr_62.513_cutoff_34 4861
200867 Illumina NODE_58_covk_22.111493_covr_62.151_cutoff_34 4754
200960 Illumina NODE_59_covk_20.721838_covr_58.451_cutoff_34 4582
200923 Illumina NODE_60_covk_21.618016_covr_60.907_cutoff_34 4484
200959 Illumina NODE_61_covk_20.282282_covr_62.576_cutoff_34 4428
200952 Illumina NODE_62_covk_21.253799_covr_59.920_cutoff_34 4311
200875 Illumina NODE_63_covk_17.516714_covr_49.888_cutoff_34 4287
200957 Illumina NODE_64_covk_17.075417_covr_47.792_cutoff_34 4236
200951 Illumina NODE_65_covk_14.977924_covr_47.794_cutoff_34 3904
200935 Illumina NODE_66_covk_4.895700_covr_14.715_cutoff_34 3215
200877 Illumina NODE_67_covk_14.933868_covr_42.201_cutoff_34 3214
200949 Illumina NODE_68_covk_21.901074_covr_61.568_cutoff_34 2798
200917 Illumina NODE_69_covk_22.887188_covr_63.410_cutoff_34 2581
200902 Illumina NODE_70_covk_21.141481_covr_59.087_cutoff_34 2382
200913 Illumina NODE_71_covk_21.853879_covr_59.577_cutoff_34 2200
200882 Illumina NODE_72_covk_18.938431_covr_51.581_cutoff_34 2113
200962 Illumina NODE_73_covk_20.126761_covr_57.575_cutoff_34 2102
200885 Illumina NODE_74_covk_21.330097_covr_58.664_cutoff_34 2056
200886 Illumina NODE_75_covk_20.392385_covr_62.172_cutoff_34 1792
200911 Illumina NODE_76_covk_18.323877_covr_47.575_cutoff_34 1791
200865 Illumina NODE_77_covk_19.765932_covr_54.224_cutoff_34 1778
200860 Illumina NODE_78_covk_19.928826_covr_52.783_cutoff_34 1223
200954 Illumina NODE_79_covk_23.864051_covr_62.280_cutoff_34 1195
200898 Illumina NODE_80_covk_24.943691_covr_67.899_cutoff_34 1058
200905 Illumina NODE_81_covk_17.382313_covr_50.084_cutoff_34 834
200939 Illumina NODE_82_covk_32.417404_covr_77.867_cutoff_34 777
200899 Illumina NODE_83_covk_22.624172_covr_55.865_cutoff_34 703
200950 Illumina NODE_84_covk_23.208872_covr_57.611_cutoff_34 640
200866 Illumina NODE_85_covk_25.981132_covr_62.409_cutoff_34 629
200871 Illumina NODE_86_covk_16.886051_covr_48.007_cutoff_34 608
200948 Illumina NODE_87_covk_19.269807_covr_32.231_cutoff_34 566
200925 Illumina NODE_88_covk_17.697842_covr_41.494_cutoff_34 516
200909 Illumina NODE_89_covk_23.754258_covr_51.310_cutoff_34 510
200878 Illumina NODE_90_covk_13.585165_covr_22.361_cutoff_34 463
200876 Illumina NODE_91_covk_22.158640_covr_48.553_cutoff_34 452
200941 Illumina NODE_92_covk_16.673529_covr_22.551_cutoff_34 439
200893 Illumina NODE_93_covk_16.796296_covr_38.173_cutoff_34 423
200955 Illumina NODE_94_covk_24.839465_covr_53.048_cutoff_34 398
200927 Illumina NODE_95_covk_35.737828_covr_82.213_cutoff_34 366
200956 Illumina NODE_96_covk_23.745318_covr_54.440_cutoff_34 366
200945 Illumina NODE_97_covk_15.362205_covr_34.745_cutoff_34 353
200926 Illumina NODE_98_covk_20.122530_covr_35.347_cutoff_34 352
200961 Illumina NODE_99_covk_14.912000_covr_31.464_cutoff_34 349
200864 Illumina NODE_100_covk_11.330579_covr_23.255_cutoff_34 341
200916 Illumina NODE_101_covk_16.775000_covr_22.965_cutoff_34 339
200938 Illumina NODE_102_covk_15.239130_covr_29.419_cutoff_34 329
200920 Illumina NODE_103_covk_14.617925_covr_24.502_cutoff_34 311
200880 Illumina NODE_104_covk_14.468293_covr_24.526_cutoff_34 304