Full information on isolate E.coli 807 (id:2576)
Provenance/primary metadata
- id
- 2576
- isolate
- E.coli 807
- isolation year
- 2023
- country
- Morocco
- source type
- Human
- host
- Human
- clinical condition
- UTI
- origin
- Urine
- phylogroup
- Unknown
- sender
- Aboubakr Khazaz, Institut Pasteur du Maroc
- curator
- Tagger Auto
- update history
- 3 updates show details
- date entered
- 2024-12-03
- datestamp
- 2024-12-03
Sequence bin
- method
- Illumina
- contigs
- 143
- total length
- 5,002,001 bp
- max length
- 324,785 bp
- mean length
- 34,980 bp
- N50
- 88,872
- L50
- 18
- N90
- 27,322
- L90
- 56
- N95
- 12,508
- L95
- 69
- %GC
- 50.77
- Ns
- 300
- gaps
- 3
- loci tagged
- 8
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: