Full information on isolate E.coli 576 (id:2575)
Provenance/primary metadata
- id
- 2575
- isolate
- E.coli 576
- isolation year
- 2022
- country
- Morocco
- source type
- Human
- host
- Human
- clinical condition
- UTI
- origin
- Urine
- phylogroup
- Unknown
- sender
- Aboubakr Khazaz, Institut Pasteur du Maroc
- curator
- Tagger Auto
- update history
- 2 updates show details
- date entered
- 2024-12-03
- datestamp
- 2024-12-03
Sequence bin
- method
- Illumina
- contigs
- 142
- total length
- 4,957,775 bp
- max length
- 322,919 bp
- mean length
- 34,914 bp
- N50
- 115,220
- L50
- 14
- N90
- 27,639
- L90
- 51
- N95
- 13,987
- L95
- 64
- %GC
- 50.70
- Ns
- 210
- gaps
- 3
- loci tagged
- 8
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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Tools
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