Full information on isolate E.coli 636 (id:2572)
Provenance/primary metadata
- id
- 2572
- isolate
- E.coli 636
- isolation year
- 2022
- country
- Morocco
- source type
- Human
- host
- Human
- clinical condition
- UTI
- origin
- Urine
- phylogroup
- Unknown
- sender
- Aboubakr Khazaz, Institut Pasteur du Maroc
- curator
- Tagger Auto
- update history
- 2 updates show details
- date entered
- 2024-12-03
- datestamp
- 2024-12-03
Sequence bin
- method
- Illumina
- contigs
- 93
- total length
- 4,944,839 bp
- max length
- 374,610 bp
- mean length
- 53,171 bp
- N50
- 178,490
- L50
- 10
- N90
- 48,197
- L90
- 29
- N95
- 31,515
- L95
- 34
- %GC
- 50.59
- Ns
- 200
- gaps
- 2
- loci tagged
- 8
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
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Tools
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