Full information on isolate E.coli 599 (id:2571)
Provenance/primary metadata
- id
- 2571
- isolate
- E.coli 599
- isolation year
- 2022
- country
- Morocco
- source type
- Human
- host
- Human
- clinical condition
- UTI
- origin
- Urine
- phylogroup
- Unknown
- sender
- Aboubakr Khazaz, Institut Pasteur du Maroc
- curator
- Tagger Auto
- update history
- 2 updates show details
- date entered
- 2024-12-03
- datestamp
- 2024-12-03
Sequence bin
- method
- Illumina
- contigs
- 94
- total length
- 4,979,753 bp
- max length
- 374,654 bp
- mean length
- 52,977 bp
- N50
- 162,659
- L50
- 11
- N90
- 63,268
- L90
- 29
- N95
- 30,266
- L95
- 35
- %GC
- 50.57
- Ns
- 400
- gaps
- 4
- loci tagged
- 8
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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Tools
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