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29 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields																cgMLST							cgMLST_ulcerans	MLST									Ribosomal MLST			spuA_island	tox
id	isolate	aliases	duplicate number	species	biovar	tox gene PCR	tox production Elek	country	travel history	host	source	infection or disease	other source info	resistance info	accession number	cgST	LINcode	Species	Lineage	Sublineage	Clonal group	Genetic cluster	cgST	atpA	dnaE	dnaK	fusA	leuA	odhA	rpoB	ST	clonal complex	rST	species	subspecies	amy	TT	prediction
25	B-D-16-78	ASM190227v1		C. diphtheriae	Other			Malaysia	Not documented	Human	nasopharyngeal swab	diphtheria			CP018331	23	0_0_165_2_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
36	c123	ASM183292v1		C. diphtheriae				Unknown	Not documented	Human	throat				GCA_001832925.1	32	0_0_165_9_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG457	GC441		8	3	8	2	7	3	3	457						2	toxigenic (diphtheriae)
49	rz379	ASM188976v1		C. diphtheriae				Malaysia	Not documented	Human	throat	diphtheria			GCA_001889765.1	43	0_0_165_2_0_1_0_0_2_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
51	rz252	ASM188978v1		C. diphtheriae				Malaysia	Not documented	Human	throat	diphtheria			GCA_001889785.1	45	0_0_165_2_0_0_0_0_1_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
53	rz378	ASM188983v1		C. diphtheriae				Malaysia	Not documented	Human	throat	diphtheria			GCA_001889835.1	47	0_0_165_2_0_1_0_0_1_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
122	FRC0137			C. diphtheriae	Mitis	Positive	Positive	France	None	Human	Not documented	Wound			ERS4330873	113	0_0_165_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG136	GC1022		3	2	4	1	3	3	13	136						2	toxigenic (diphtheriae)
136	FRC0375			C. diphtheriae	Mitis	Positive	Positive	France	None	Human	Not documented	Wound			ERS1867703	126	0_0_165_1_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG389	GC244		3	2	4	1	3	3	2	389						2	toxigenic (diphtheriae)
182	rz658	ASM211508v1		C. diphtheriae				Malaysia	Not documented	Human	throat swab	diphtheria			GCA_002115085.1	170	0_0_165_2_0_1_0_0_3_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
184	rz656	ASM211512v1		C. diphtheriae				Malaysia	Not documented	Human	throat swab	diphtheria			GCA_002115125.1	1514 [+1 more] 172	0_0_165_10_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG406	GC407		2	3	3	2	7	3	3	406						3	toxigenic (diphtheriae)
186	rz600	ASM211515v1		C. diphtheriae				Malaysia	Not documented	Human	throat swab	diphtheria			GCA_002115155.1	174	0_0_165_2_0_1_0_0_4_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
193	rz553	ASM211532v1		C. diphtheriae				Malaysia	Not documented	Human	throat swab	diphtheria			GCA_002115325.1	180	0_0_165_2_0_1_0_0_0_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
203	50	ASM220114v1		C. diphtheriae				Belarus	Not documented	Human		Asymptomatic			GCA_002201145.1	1528 [+1 more] 190	0_0_165_8_0_2_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC60		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)
204	1050	ASM220116v1		C. diphtheriae				Belarus	Not documented	Human	Sore throat				GCA_002201165.1	1529 [+1 more] 191	0_0_165_8_0_5_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC60		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)
218	1360	S44		C. diphtheriae	Gravis			Belarus	Not documented	Human		diphtheria			GCA_002202495.1	1542 [+1 more] 205	0_0_165_8_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC60		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)
239	4568	S92		C. diphtheriae	Mitis			Belarus	Not documented	Human	sore throat				GCA_002202925.1	1563 [+1 more] 225	0_0_165_8_1_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC373		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)
258	847	S36		C. diphtheriae	Mitis			Belarus	Not documented	Human	sore throat				GCA_002203335.1	1582 [+1 more] 244	0_0_165_8_0_1_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC60		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)
292	rz659	ASM221314v1		C. diphtheriae				Malaysia	Not documented	Human	throat swab	diphtheria			GCA_002213145.1	170	0_0_165_2_0_1_0_0_3_0	C. diphtheriae	0_0	SL40	ClG453	GC42		22	3	94	2	3	3	3	453						2	toxigenic (diphtheriae)
557	CIP107540			C. diphtheriae	Mitis	Negative	Negative	France	Not documented	Human	Wound					144	0_0_165_12_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG153	GC988		1	3	3	36	32	3	2	153
563	CIP107544			C. diphtheriae	Mitis	Negative		Romania	Not documented	Human					ERS4330808	1784 [+1 more] 530	0_0_165_8_0_4_0_1_0_0	C. diphtheriae	0_0	SL40	ClG40	GC60		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)
572	CIP107552			C. diphtheriae	Mitis	Positive	Positive	Thailand	Not documented	Human					ERS4330814	1791 [+1 more] 539	0_0_165_3_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG10043	GC883		3	3	4	2	3	3	3	209						2	toxigenic (diphtheriae)
583	CIP107559			C. diphtheriae	Mitis	Positive	Positive	India	Not documented	Human					ERS4330819	1801 [+1 more] 550	0_0_165_5_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG20	GC880		8	3	3	2	7	3	3	20						2	toxigenic (diphtheriae)
924	SRR6816601	CD25		C. diphtheriae	Mitis			Australia	Not documented	Human	Cutaneous (leg)				PRJNA436425	1978 [+1 more] 768	0_0_165_6_0_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG10202	GC768		8	3	3	2	7	3	3	20
1290	PC0155			C. diphtheriae	Intermedius		Negative	Guatemala	None	Human					SAMN13343871	2191 [+1 more] 1096	0_0_165_8_2_0_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC401		8	3	19	2	7	3	3	40						27	non-toxigenic (diphtheriae)
1302	PC0105			C. diphtheriae	Mitis		Negative	Russia	None	Human					SAMN13343854	2200 [+1 more] 1107	0_0_165_8_0_3_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC60		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)
1305	PC0351			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343878	2202 [+1 more] 1109	0_0_165_8_0_4_0_0_0_0	C. diphtheriae	0_0	SL40	ClG40	GC60		8	3	19	2	7	3	3	40						37	non-toxigenic (diphtheriae)

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Ahmad et al. 2017 Genome Announc 5:
Badell et al. 2020 Res Microbiol 171:122-127
Badell et al. 2021 Lancet Microbe 2:e386-e396
Barksdale 1970 Bacteriol Rev 34:378-422
Berger et al. 2019 Euro Surveill 24:
Cerdeño-Tárraga et al. 2003 Nucleic Acids Res 31:6516-23
Chorlton et al. 2020 J Clin Microbiol 58:
Dangel et al. 2018 Emerg Infect Dis 24:1239-1245
Dazas et al. 2018 Int J Syst Evol Microbiol 68:3826-3831
du Plessis et al. 2017 Emerg Infect Dis 23:1308-1315
Encinas et al. 2015 Mem Inst Oswaldo Cruz 110:817-9
Fokin et al. 1972 Neirofiziologiia 4:439-46
Forde et al. 2021 Clin Infect Dis 73:e4531-e4538
Graham et al. 2023 Epidemiol Infect [Epub ahead of print]:1-17
Grimont et al. 2004 Res Microbiol 155:162-6
Grosse-Kock et al. 2017 BMC Genomics 18:873
Guglielmini et al. 2021 J Clin Microbiol 59:e0158121
Hennart et al. 2020 Genome Med 12:107
Hoefer et al. 2021 J Clin Microbiol 59:
Hong et al. 2017 Infect Genet Evol 54:263-270
Lai et al. 2018 Emerg Infect Dis 24:2084-2086
Meinel et al. 2016 Clin Microbiol Infect 22:1003.e1-1003.e8
Nakao et al. 1996 J Clin Microbiol 34:1711-6
Pivot et al. 2019 J Clin Microbiol 57:
Sangal et al. 2012 J Bacteriol 194:3269
Sangal et al. 2012 J Bacteriol 194:4738
Sangal et al. 2014 Infect Genet Evol 21:54-7
Sangal et al. 2015 BMC Genomics 16:765
Sangal et al. 2017 Front Public Health 5:218
Schaeffer et al. 2021 J Clin Microbiol 59:
Slinko et al. 2023 Commun Dis Intell (2018) 47:
Striga et al. 1990 Acta Med Iugosl 44:521-32
Tagini et al. 2018 Front Microbiol 9:1743
Timms et al. 2018 BMC Genomics 19:869
Trost et al. 2012 J Bacteriol 194:3199-215
Will et al. 2021 Nat Commun 12:1500
Xiaoli et al. 2020 Microb Genom 6:

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