Search or browse database

Restricted view: Note that you are currently restricted to viewing or downloading data that was submitted on or prior to 2024-12-31. Please log in to access the full dataset.

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Filters

Publication:
Project:
cgMLST profiles:
cgST (cgMLST):
cgMLST ulcerans pr…
cgST (cgMLST ulcer…
MLST profiles:
ST (MLST):
Ribosomal MLST pro…
Tox profiles:
Include old record versions

Add filter: Add

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Sequence bin
Assembly checks
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

58 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields																cgMLST							cgMLST_ulcerans	MLST									Ribosomal MLST			spuA_island	tox
id	isolate	aliases	duplicate number	species	biovar	tox gene PCR	tox production Elek	country	travel history	host	source	infection or disease	other source info	resistance info	accession number	cgST	LINcode	Species	Lineage	Sublineage	Clonal group	Genetic cluster	cgST	atpA	dnaE	dnaK	fusA	leuA	odhA	rpoB	ST	clonal complex	rST	species	subspecies	amy	TT	prediction
140	FRC0411			C. diphtheriae	Gravis	Negative		New Caledonia	None	Human	Not documented	Wound			ERS4330931	1502 [+1 more] 130	0_0_47_0_0_0_2_7_0_0	C. diphtheriae	0_0	SL416	ClG416	GC14		25	16	35	44	3	3	28	416					6
434	FRC0322			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330911	1699 [+1 more] 414	0_0_30_0_12_0_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC740		2	10	56	45	11	3	3	228					24
442	FRC0356			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330918	1702 [+1 more] 422	0_0_30_0_6_0_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC555		2	10	56	45	11	3	3	228					24
478	FRC0456			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330949	1723 [+1 more] 452	0_0_30_0_9_0_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC976		2	10	56	45	11	3	3	228					24
484	FRC0469			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330954	1728 [+1 more] 458	0_0_30_0_1_1_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC31		2	10	56	45	11	3	3	228					52
497	FRC0485			C. diphtheriae	Gravis	Positive	Positive	New Caledonia	Vanuatu	Human	Cutaneous	Not documented			ERS4330965	1737 [+1 more] 468	0_0_220_1_0_0_0_0_0_0	C. diphtheriae	0_0	SL380	ClG10233	GC801		48	44	88	1	60	1	6	380						3	toxigenic (diphtheriae)
499	FRC0492			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330967	1739 [+1 more] 469	0_0_47_0_0_0_7_0_0_0	C. diphtheriae	0_0	SL416	ClG416	GC14		25	16	35	44	3	3	28	416					6
500	FRC0493			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Respiratory	Not documented			ERS4330968	1740 [+1 more] 470	0_14_2_0_0_1_0_0_0_0	C. diphtheriae	0_14	SL533	ClG533	GC58		33	57	112	44	3	1	13	533
503	FRC0497			C. diphtheriae	Mitis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330969	1742 [+1 more] 473	0_0_174_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL522	ClG522	GC289		1	1	32	1	70	5	30	522
515	FRC0513			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330974	1748 [+1 more] 485	0_0_30_0_1_10_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC31		2	10	56	45	11	3	3	228					52
523	FRC0524			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330979	1754 [+1 more] 493	0_0_47_0_0_0_2_10_0_0	C. diphtheriae	0_0	SL416	ClG416	GC14		25	16	35	44	3	3	28	416					6
527	FRC0533			C. diphtheriae	Gravis	Negative		New Caledonia	None	Human	Cutaneous	Not documented			ERS4330981	1757 [+1 more] 497	0_0_30_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC661		2	10	56	45	11	3	3	228					24
528	FRC0534			C. diphtheriae	Mitis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330982	498	0_0_173_0_0_1_0_0_0_0	C. diphtheriae	0_0	SL86	ClG86	GC102		3	2	35	1	18	3	2	86
536	FRC0547			C. diphtheriae	Mitis	Negative		New Caledonia	Not documented	Human	Cutaneous	Not documented			ERS4330989	1763 [+1 more] 505	0_14_4_0_0_1_0_0_0_0	C. diphtheriae	0_14	SL524	ClG524	GC52		13	29	108	64	60	1	23	524
861	FRC0577			C. diphtheriae	Gravis	Negative		New Caledonia	None	Human	Cutaneous	Not documented				1937 [+1 more] 714	0_0_30_0_1_5_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC31		2	10	56	45	11	3	3	228					70
862	FRC0578			C. diphtheriae	Mitis	Negative		New Caledonia	Not documented	Human	Ambiguous	Ambiguous	Abscess			1938 [+1 more] 715	0_0_172_0_0_1_0_0_0_0	C. diphtheriae	0_0	SL232	ClG232	GC68		19	1	20	1	18	3	13	232
863	FRC0579			C. diphtheriae	Mitis	Negative		New Caledonia	Not documented	Human	Cutaneous and soft tissue	Cutaneous and soft tissue infection				1939 [+1 more] 716	0_14_8_1_0_3_0_0_0_0	C. diphtheriae	0_14	SL911	ClG605	GC83		1	44	9	1	26	69	4	605
864	FRC0580			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous and soft tissue	Cutaneous and soft tissue infection	Wound			1940 [+1 more] 717	0_0_47_0_0_0_2_0_0_0	C. diphtheriae	0_0	SL416	ClG416	GC14		25	16	35	44	3	3	28	416					6
865	FRC0581			C. diphtheriae	Mitis	Negative		New Caledonia	Not documented	Human	Ambiguous	Ambiguous	Abscess			1941 [+1 more] 718	0_14_4_0_0_1_0_1_0_0	C. diphtheriae	0_14	SL524	ClG524	GC52		13	29	108	64	60	1	23	524
868	FRC0599			C. diphtheriae	Gravis	Negative		New Caledonia	Not documented	Human	Cutaneous and soft tissue	Cutaneous and soft tissue infection	Wound			1943 [+1 more] 720	0_14_2_0_0_0_0_0_0_0	C. diphtheriae	0_14	SL533	ClG533	GC58		33	57	112	44	3	1	13	533
869	FRC0600			C. diphtheriae	Gravis	Negative		New Caledonia	None	Human	Not documented	Not documented				1944 [+1 more] 721	0_0_47_0_0_0_3_0_0_0	C. diphtheriae	0_0	SL416	ClG416	GC14		25	16	35	44	3	3	28	416					6
870	FRC0602			C. diphtheriae	Gravis	Negative		New Caledonia	None	Human	Cutaneous	Not documented				1945 [+1 more] 722	0_0_30_0_1_6_0_0_0_0	C. diphtheriae	0_0	SL228	ClG228	GC31		2	10	56	45	11	3	3	228					52
962	FRC0713			C. diphtheriae	Gravis	Positive	Positive	New Caledonia	Vanuatu	Human	Cutaneous	Wound				2003 [+1 more] 794	0_11_0_1_1_0_2_0_1_0	C. diphtheriae	0_11	SL120	ClG120	GC46		4	21	29	1	3	3	3	120					74	21	toxigenic (diphtheriae)
963	FRC0714			C. diphtheriae	Gravis	Positive	Positive	New Caledonia	Vanuatu	Human	Cutaneous	Wound				2004 [+1 more] 795	0_11_0_1_1_0_2_0_0_0	C. diphtheriae	0_11	SL120	ClG120	GC46		4	21	29	1	3	3	3	120					74	21	toxigenic (diphtheriae)
964	FRC0715			C. diphtheriae	Gravis	Positive	Positive	New Caledonia	Vanuatu	Human	Cutaneous	Wound + ORL				2005 [+1 more] 796	0_11_0_1_1_0_2_0_2_0	C. diphtheriae	0_11	SL120	ClG120	GC46		4	21	29	1	3	3	3	120					74	21	toxigenic (diphtheriae)

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

linked to any publication
not linked to any publication
Ahmad et al. 2017 Genome Announc 5:
Badell et al. 2020 Res Microbiol 171:122-127
Badell et al. 2021 Lancet Microbe 2:e386-e396
Barksdale 1970 Bacteriol Rev 34:378-422
Berger et al. 2019 Euro Surveill 24:
Cerdeño-Tárraga et al. 2003 Nucleic Acids Res 31:6516-23
Chorlton et al. 2020 J Clin Microbiol 58:
Dangel et al. 2018 Emerg Infect Dis 24:1239-1245
Dazas et al. 2018 Int J Syst Evol Microbiol 68:3826-3831
du Plessis et al. 2017 Emerg Infect Dis 23:1308-1315
Encinas et al. 2015 Mem Inst Oswaldo Cruz 110:817-9
Fokin et al. 1972 Neirofiziologiia 4:439-46
Forde et al. 2021 Clin Infect Dis 73:e4531-e4538
Graham et al. 2023 Epidemiol Infect [Epub ahead of print]:1-17
Grimont et al. 2004 Res Microbiol 155:162-6
Grosse-Kock et al. 2017 BMC Genomics 18:873
Guglielmini et al. 2021 J Clin Microbiol 59:e0158121
Hennart et al. 2020 Genome Med 12:107
Hoefer et al. 2021 J Clin Microbiol 59:
Hong et al. 2017 Infect Genet Evol 54:263-270
Lai et al. 2018 Emerg Infect Dis 24:2084-2086
Meinel et al. 2016 Clin Microbiol Infect 22:1003.e1-1003.e8
Nakao et al. 1996 J Clin Microbiol 34:1711-6
Pivot et al. 2019 J Clin Microbiol 57:
Sangal et al. 2012 J Bacteriol 194:3269
Sangal et al. 2012 J Bacteriol 194:4738
Sangal et al. 2014 Infect Genet Evol 21:54-7
Sangal et al. 2015 BMC Genomics 16:765
Sangal et al. 2017 Front Public Health 5:218
Schaeffer et al. 2021 J Clin Microbiol 59:
Slinko et al. 2023 Commun Dis Intell (2018) 47:
Striga et al. 1990 Acta Med Iugosl 44:521-32
Tagini et al. 2018 Front Microbiol 9:1743
Timms et al. 2018 BMC Genomics 19:869
Trost et al. 2012 J Bacteriol 194:3199-215
Will et al. 2021 Nat Commun 12:1500
Xiaoli et al. 2020 Microb Genom 6:

Search or browse database

Modify form parameters

Analysis tools

Dashboard settings