Main projects defined in the Corynebacterium cgMLST database
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Project id
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Isolates
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3
yemen2019
Yemen 2017-2020 outbreak
50
5
cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
440
6
Hennart_diphtOscan_2023_France_2022
Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
101
7
ResistanceGenomics
Hennart et al. 247 isolates dataset
247
10
New Caledonia 2015-2019 study
Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/)
58
11
SL453 study in 2022
See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication)
29
13
Oxford
Isolates from former Oxford database
677
14
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
1250
17
2022_EuropeanWideReemergence_collection
Collection of the Hoefer et al. study on a large-scale Corynebacterium diphtheriae outbreak among migrant populations in Europe in 2022
363
18
French Guiana 2016-2021 study
Isolates included in the French Guiana 2016-2021 study (Gaillet et al., Emerg Inf Dis, 2024, https://pubmed.ncbi.nlm.nih.gov/39043387/)
63
25
Diphtheria in Australia, 2017-2022
Graham et al. 2023 (https://pubmed.ncbi.nlm.nih.gov/37212056/)
127
30
C. ramonii and C. ulcerans, Canada
Corynebacterium ramonii and C. ulcerans isolates from Vancouver, Canada. Nanopore R.10.4.1 (autotag). Published in: Lowe et al Emerg Inf Dis, 2025 (https://pubmed.ncbi.nlm.nih.gov/39773277/)
16
36
To_remove_Corynebacterium_Nanopore_R10
349
43
2023_EuropeanWideReemergence_followup
EU isolates 2023 (Hoefer et al.)
59
45
cgMLST C. ulcerans set-up study
Isolates included in the cgMLST study for C. ulcerans and C. ramonii (publicly-available genomes and some isolates from the French NRC)
618
59
Corynebacterium_Nanopore_R10_2025
Benchmarking Nanopore R10 sequencing vs Illumina for cgMLST typing
8
72
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.