| 3 | yemen2019 | Yemen 2017-2020 outbreak | 50 |
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| 5 | cgMLST set-up study | Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/) | 440 |
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| 6 | Hennart_diphtOscan_2023_France_2022 | Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/) | 101 |
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| 7 | ResistanceGenomics | Hennart et al. 247 isolates dataset | 247 |
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| 10 | New Caledonia 2015-2019 study | Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/) | 58 |
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| 11 | SL453 study in 2022 | See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication) | 29 |
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| 13 | Oxford | Isolates from former Oxford database | 678 |
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| 14 | Hennart_diphtOscan_2023_OtherIsolates | Publicly-available genomes and isolates from the French NRC (2018-2021) | 1231 |
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| 17 | 2022_EuropeanWideReemergence_collection | Collection of the Hoefer et al. study on a large-scale Corynebacterium diphtheriae outbreak among migrant populations in Europe in 2022 | 363 |
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| 18 | French Guiana 2016-2021 study | Isolates included in the French Guiana 2016-2021 study (Gaillet et al., Emerg Inf Dis, 2024, https://pubmed.ncbi.nlm.nih.gov/39043387/) | 63 |
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| 25 | Diphtheria in Australia, 2017-2022 | Graham et al. 2023 (https://pubmed.ncbi.nlm.nih.gov/37212056/) | 127 |
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| 30 | C. ramonii and C. ulcerans, Canada | Corynebacterium ramonii and C. ulcerans isolates from Vancouver, Canada. Nanopore R.10.4.1 (autotag). Published in: Lowe et al Emerg Inf Dis, 2025 (https://pubmed.ncbi.nlm.nih.gov/39773277/) | 16 |
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| 36 | To_remove_Corynebacterium_Nanopore_R10 | | 349 |
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| 43 | 2023_EuropeanWideReemergence_followup | EU isolates 2023 (Hoefer et al.) | 59 |
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| 45 | cgMLST C. ulcerans set-up study | Isolates included in the cgMLST study for C. ulcerans and C. ramonii (publicly-available genomes and some isolates from the French NRC) | 618 |
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| 59 | Corynebacterium_Nanopore_R10_2025 | Benchmarking Nanopore R10 sequencing vs Illumina for cgMLST typing | 8 |
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