Full information on isolate 75480 (id:4752)
Provenance/primary metadata
- id
- 4752
- isolate
- 75480
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2023
- country
- South Africa
- continent
- Africa
- state or locality
- Western Cape
- travel history
- Unknown
- host
- Human
- source
- blood
- infection or disease
- endocarditis
- sender
- Rito Mikhari, National Institute for Communicable Diseases, South Africa
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2023-12-11
- datestamp
- 2024-03-26
- outbreak or sporadic
- sporadic
Sequence bin
- contigs
- 38
- total length
- 2,354,366 bp
- max length
- 379,773 bp
- mean length
- 61,957 bp
- N50
- 157,680
- L50
- 5
- N90
- 38,997
- L90
- 17
- N95
- 30,364
- L95
- 20
- %GC
- 53.36
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,311
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
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Schemes and loci
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