Microreact - Corynebacterium cgMLST
This plugin uploads data for analysis within the Microreact online service:
Microreact is developed at the The Centre for Genomic Pathogen Surveillance by a team led by David Aanensen.
Web site: https://microreact.org
Publication: Argimón at al. (2016) Microreact: visualizing and sharing data for genomic epidemiology and phylogeography. Microb Genom 2:e000093.
This tool will generate neighbor-joining trees from concatenated nucleotide sequences or allelic profiles. For sequencr trees, only DNA loci that have a corresponding database containing allele sequence identifiers, or DNA and peptide loci with genome sequences, can be included. Please check the loci that you would like to include. Alternatively select one or more schemes to include all loci that are members of the scheme.
Analysis is limited to 2,000 records.
If generating a tree by aligning sequences then it is also limited to 100,000 sequences (records x loci).