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Full information on isolate FRC0402 (id:97)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
97
isolate
FRC0402
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
isolation year
2015
country
Réunion
continent
Africa
state or locality
La Reunion
travel history
None
host
Human
source
Not documented
infection or disease
Wound
accession number
ERS4330925
sender
Marina Barros, Institut Pasteur
curator
Auto Tagger
update history
1346 updates show details
date entered
2017-02-13
datestamp
2025-07-18

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
47
total length
2,415,289 bp
max length
315,903 bp
mean length
51,390 bp
N50
128,340
L50
7
N90
41,875
L90
19
N95
27,205
L95
22
%GC
53.62
Ns
0
gaps
0
loci tagged
1,414

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_134_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL410
Clonal group
ClG410
Genetic cluster
GC252

Show all thresholds

PrefixThresholdMatching isolates
0_0_134_0_0_081
0_0_134_0_0_0_041
0_0_134_0_0_0_0_021
0_0_134_0_0_0_0_0_011
0_0_134_0_0_0_0_0_0_001
012202380
0_010352162
0_0_1345002
0_0_134_0552
0_0_134_0_0252
0_0_134_0_0_081
0_0_134_0_0_0_041
0_0_134_0_0_0_0_021
0_0_134_0_0_0_0_0_011
0_0_134_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental55 (2 isolates)
SL: 410
Genomic_clustercgMLSTSingle-linkage25experimental73 (2 isolates)
SublineagecgMLSTSingle-linkage500experimental55 (2 isolates)
SL: 410
Genomic_clustercgMLSTSingle-linkage25experimental73 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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