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Full information on isolate FRC0713 (id:962)

Projects

This isolate is a member of the following projects:

New Caledonia 2015-2019 study: Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/)
Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 962
isolate: FRC0713
species: C. diphtheriae
biovar: Gravis
tox gene PCR: Positive
tox production Elek: Positive
isolation year: 2019
country: New Caledonia
continent: Oceania
state or locality: New Caledonia
travel history: Vanuatu
host: Human
source: Cutaneous
infection or disease: Wound
sender: Sylvain Brisse, Institut Pasteur, Paris, France
curator: Auto Tagger
update history: 19 updates show details
date entered: 2020-09-07
datestamp: 2025-07-17

Sequence bin

method: Unknown
contigs: 32
total length: 2,345,000 bp
max length: 292,697 bp
mean length: 73,282 bp
N50: 145,332
L50: 6
N90: 34,393
L90: 17
N95: 25,932
L95: 21
%GC: 53.37
Ns: 0
gaps: 0
loci tagged: 1,290

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_11_0_1_1_0_2_0_1_0
Species: C. diphtheriae
Lineage: 0_11
Sublineage: SL120
Clonal group: ClG120
Genetic cluster: GC46

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Prefix	Threshold	Matching isolates
0_11_0_1_1_0	8	7
0_11_0_1_1_0_2	4	5
0_11_0_1_1_0_2_0	2	4
0_11_0_1_1_0_2_0_1	1	1
0_11_0_1_1_0_2_0_1_0	0	1
0	1220	2380
0_11	1035	14
0_11_0	500	14
0_11_0_1	55	13
0_11_0_1_1	25	9
0_11_0_1_1_0	8	7
0_11_0_1_1_0_2	4	5
0_11_0_1_1_0_2_0	2	4
0_11_0_1_1_0_2_0_1	1	1
0_11_0_1_1_0_2_0_1_0	0	1

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	227 (14 isolates)	SL: 120
Genomic_cluster	cgMLST	Single-linkage	25	experimental	499 (9 isolates)
Sublineage	cgMLST	Single-linkage	500	experimental	227 (14 isolates)	SL: 120
Genomic_cluster	cgMLST	Single-linkage	25	experimental	499 (9 isolates)

Schemes and loci

All loci
- Classical schemes
- Other schemes
  - PBP
  - spuA_island
  - tox

Navigate and select schemes within tree to display allele designations

Tools

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