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Full information on isolate FRC0712 (id:961)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
French Guiana 2016-2021 study
Isolates included in the French Guiana 2016-2021 study (Gaillet et al., Emerg Inf Dis, 2024, https://pubmed.ncbi.nlm.nih.gov/39043387/)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
961
isolate
FRC0712
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
2019
country
French Guiana
continent
South America
state or locality
French Guiana
travel history
Not documented
host
Human
source
Not documented
infection or disease
Not documented
sender
Sylvain Brisse, Institut Pasteur, Paris, France
curator
Auto Tagger
update history
16 updates show details
date entered
2020-09-07
datestamp
2025-07-02

Sequence bin

method
Unknown
contigs
52
total length
2,428,760 bp
max length
220,083 bp
mean length
46,707 bp
N50
108,068
L50
8
N90
29,548
L90
26
N95
23,323
L95
31
%GC
53.32
Ns
0
gaps
0
loci tagged
1,272

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 77%
SPECIES Corynebacterium rouxii Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium rouxii 22%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_25_0_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_25
Sublineage
SL693
Clonal group
ClG693
Genetic cluster
GC459

Show all thresholds

PrefixThresholdMatching isolates
0_25_0_0_0_081
0_25_0_0_0_0_041
0_25_0_0_0_0_0_021
0_25_0_0_0_0_0_0_011
0_25_0_0_0_0_0_0_0_001
012202380
0_2510351
0_25_05001
0_25_0_0551
0_25_0_0_0251
0_25_0_0_0_081
0_25_0_0_0_0_041
0_25_0_0_0_0_0_021
0_25_0_0_0_0_0_0_011
0_25_0_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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