Full information on isolate FRC0702 (id:954)
Projects
Provenance/primary metadata
- id
- 954
- isolate
- FRC0702
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2019
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- Not documented
- infection or disease
- Not documented
- sender
- Sylvain Brisse, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 14 updates show details
- date entered
- 2020-09-07
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 40
- total length
- 2,507,323 bp
- max length
- 459,237 bp
- mean length
- 62,684 bp
- N50
- 136,518
- L50
- 4
- N90
- 25,903
- L90
- 18
- N95
- 19,039
- L95
- 24
- %GC
- 53.54
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,307
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_209_2_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL295
- Clonal group
- ClG10181
- Genetic cluster
- GC767
Similar isolates (determined by classification schemes)
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Schemes and loci
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