Full information on isolate FRC0680 (id:900)
Projects
Provenance/primary metadata
- id
- 900
- isolate
- FRC0680
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2018
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Iceland
- host
- Human
- source
- Respiratory
- infection or disease
- Not documented
- sender
- Sylvain Brisse, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 15 updates show details
- embargo history
- show details
- date entered
- 2019-03-08
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 42
- total length
- 2,367,172 bp
- max length
- 345,262 bp
- mean length
- 56,362 bp
- N50
- 160,394
- L50
- 5
- N90
- 31,053
- L90
- 20
- N95
- 21,669
- L95
- 24
- %GC
- 53.45
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,382
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_4_1_3_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG32
- Genetic cluster
- GC28
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 23 (30 isolates) | SL: 32 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 23 (17 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 23 (30 isolates) | SL: 32 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 23 (17 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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