Full information on isolate FRC0301 (id:9)
Projects
This isolate is a member of the following project:
- cgMLST set-up study
- Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Provenance/primary metadata
- id
- 9
- isolate
- FRC0301
- species
- C. belfantii
- biovar
- Belfanti
- tox gene PCR
- Negative
- isolation year
- 2000
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- respiratory
- infection or disease
- Not documented
- accession number
- ERS1867702
- epidemic cluster
- cryptic_4
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1330 updates show details
- embargo history
- show details
- date entered
- 2017-01-31
- datestamp
- 2025-07-18
Publications (2)
- Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S (2018). Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov. Int J Syst Evol Microbiol 68:3826-3831
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 190
- total length
- 2,756,747 bp
- max length
- 143,236 bp
- mean length
- 14,510 bp
- N50
- 38,471
- L50
- 23
- N90
- 10,353
- L90
- 75
- N95
- 5,365
- L95
- 93
- %GC
- 53.89
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,385
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 2_0_0_1_0_0_0_0_0_0
- Species
- C. belfantii
- Lineage
- 2_0
- Sublineage
- SL106
- Clonal group
- ClG106
- Genetic cluster
- GC116
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 9 (2 isolates) | SL: 106 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 9 (2 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 9 (2 isolates) | SL: 106 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 9 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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