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Full information on isolate CN2000 (id:845)

Projects

This isolate is a member of the following projects:

cgMLST set-up study: Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 845
isolate: CN2000
alias: PW8
species: C. diphtheriae
isolation year: 1973
country: India
continent: Asia
travel history: Not documented
host: Human
accession number: GCA_004916775
epidemic cluster: cryptic_6
sender: Julien Guglielmini, Institut Pasteur, France
curator: Auto Tagger
update history: 11 updates show details
date entered: 2019-11-28
datestamp: 2025-07-18

Publication (1)

Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method: Unknown
contigs: 1
length: 2,530,683 bp
%GC: 53.71
Ns: 29
gaps: 4
loci tagged: 1,286

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Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_0_196_0_0_2_0_1_0_0
Species: C. diphtheriae
Lineage: 0_0
Sublineage: SL44
Clonal group: ClG44
Genetic cluster: GC63

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Prefix	Threshold	Matching isolates
0_0_196_0_0_2	8	3
0_0_196_0_0_2_0	4	3
0_0_196_0_0_2_0_1	2	1
0_0_196_0_0_2_0_1_0	1	1
0_0_196_0_0_2_0_1_0_0	0	1
0	1220	2380
0_0	1035	2162
0_0_196	500	6
0_0_196_0	55	6
0_0_196_0_0	25	6
0_0_196_0_0_2	8	3
0_0_196_0_0_2_0	4	3
0_0_196_0_0_2_0_1	2	1
0_0_196_0_0_2_0_1_0	1	1
0_0_196_0_0_2_0_1_0_0	0	1

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	20 (6 isolates)	SL: 44
Genomic_cluster	cgMLST	Single-linkage	25	experimental	20 (6 isolates)
Sublineage	cgMLST	Single-linkage	500	experimental	20 (6 isolates)	SL: 44
Genomic_cluster	cgMLST	Single-linkage	25	experimental	20 (6 isolates)

Schemes and loci

All loci
- Classical schemes
- Other schemes
  - PBP
  - spuA_island
  - tox

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