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Full information on isolate CIP107516 (id:816)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 816
isolate: CIP107516
species: C. diphtheriae
biovar: Gravis
isolation year: 1993
country: Romania
continent: Europe
travel history: None
host: Human
sender: Sylvain Brisse, Institut Pasteur, Paris, France
curator: Auto Tagger
update history: 15 updates show details
embargo history: show details
date entered: 2019-03-08
datestamp: 2025-07-17

Sequence bin

method: Illumina
contigs: 47
total length: 2,370,820 bp
max length: 345,286 bp
mean length: 50,443 bp
N50: 144,816
L50: 6
N90: 28,200
L90: 21
N95: 19,860
L95: 26
%GC: 53.46
Ns: 0
gaps: 0
loci tagged: 1,388

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Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Corynebacterium diphtheriae	Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae	100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_0_19_0_0_0_0_0_0_0
Species: C. diphtheriae
Lineage: 0_0
Sublineage: SL32
Clonal group: ClG10001
Genetic cluster: GC674

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Prefix	Threshold	Matching isolates
0_0_19_0_0_0	8	1
0_0_19_0_0_0_0	4	1
0_0_19_0_0_0_0_0	2	1
0_0_19_0_0_0_0_0_0	1	1
0_0_19_0_0_0_0_0_0_0	0	1
0	1220	2380
0_0	1035	2162
0_0_19	500	102
0_0_19_0	55	1
0_0_19_0_0	25	1
0_0_19_0_0_0	8	1
0_0_19_0_0_0_0	4	1
0_0_19_0_0_0_0_0	2	1
0_0_19_0_0_0_0_0_0	1	1
0_0_19_0_0_0_0_0_0_0	0	1

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups Hide single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	23 (30 isolates)	SL: 32
Sublineage	cgMLST	Single-linkage	500	experimental	23 (30 isolates)	SL: 32
Genomic_cluster	cgMLST	Single-linkage	25	experimental	437 (1 isolate)

Schemes and loci

All loci

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Tools

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