Full information on isolate 07-1160 (id:812)
Projects
Provenance/primary metadata
- id
- 812
- isolate
- 07-1160
- species
- C. diphtheriae
- biovar
- Belfanti
- tox gene PCR
- Negative
- isolation year
- 2007
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- None
- host
- Human
- source
- Respiratory
- infection or disease
- Not documented
- comments
- Bronchial aspiration
- sender
- Sylvain Brisse, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 26 updates show details
- embargo history
- show details
- date entered
- 2019-03-08
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 50
- total length
- 2,390,240 bp
- max length
- 272,287 bp
- mean length
- 47,805 bp
- N50
- 101,585
- L50
- 8
- N90
- 28,530
- L90
- 24
- N95
- 21,902
- L95
- 28
- %GC
- 53.46
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,387
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_5_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG10080
- Genetic cluster
- GC670
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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