Home About Us Contact What's New
Home>Organism>Corynebacterium cgMLST>Isolate information
Help

Full information on isolate KL0965 (id:787)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
787
isolate
KL0965
species
C. diphtheriae
biovar
Gravis
isolation year
2017
city
Dortmund
country
Germany
continent
Europe
travel history
Sri Lanka
host
Human
source
missing
infection or disease
wound infection
accession number
PRJNA416260
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
14 updates show details
embargo history
show details
date entered
2018-07-13
datestamp
2025-07-17
outbreak or sporadic
Sporadic

Publications (2)

  • Dangel A, Berger A, Konrad R, Bischoff H, Sing A (2018). Geographically Diverse Clusters of Nontoxigenic Corynebacterium diphtheriae Infection, Germany, 2016-2017. Emerg Infect Dis 24:1239-1245
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
27
total length
2,489,667 bp
max length
481,088 bp
mean length
92,210 bp
N50
186,784
L50
4
N90
49,013
L90
13
N95
28,867
L95
16
%GC
53.56
Ns
0
gaps
0
loci tagged
1,387

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_209_0_3_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL295
Clonal group
ClG295
Genetic cluster
GC610

Show all thresholds

PrefixThresholdMatching isolates
0_0_209_0_3_081
0_0_209_0_3_0_041
0_0_209_0_3_0_0_021
0_0_209_0_3_0_0_0_011
0_0_209_0_3_0_0_0_0_001
012202380
0_010352162
0_0_20950014
0_0_209_0556
0_0_209_0_3251
0_0_209_0_3_081
0_0_209_0_3_0_041
0_0_209_0_3_0_0_021
0_0_209_0_3_0_0_0_011
0_0_209_0_3_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental41 (13 isolates)
SL: 295
SublineagecgMLSTSingle-linkage500experimental41 (13 isolates)
SL: 295
Genomic_clustercgMLSTSingle-linkage25experimental424 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: