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Full information on isolate KL0952 (id:782)

Projects

This isolate is a member of the following projects:

cgMLST set-up study: Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 782
isolate: KL0952
species: C. diphtheriae
biovar: Gravis
isolation year: 2017
city: Berlin
country: Germany
continent: Europe
travel history: Not documented
host: Human
source: missing
infection or disease: wound infection
accession number: PRJNA416260
epidemic cluster: cryptic_5
sender: Melody Dazas, Institut Pasteur
curator: Auto Tagger
update history: 16 updates show details
embargo history: show details
date entered: 2018-07-13
datestamp: 2025-07-17
outbreak or sporadic: Sporadic

Publications (2)

Dangel A, Berger A, Konrad R, Bischoff H, Sing A (2018). Geographically Diverse Clusters of Nontoxigenic Corynebacterium diphtheriae Infection, Germany, 2016-2017. Emerg Infect Dis 24:1239-1245
Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method: Unknown
contigs: 37
total length: 2,364,692 bp
max length: 425,838 bp
mean length: 63,911 bp
N50: 157,933
L50: 5
N90: 39,759
L90: 15
N95: 21,373
L95: 20
%GC: 53.43
Ns: 0
gaps: 0
loci tagged: 1,362

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_0_42_0_2_0_0_0_0_0
Species: C. diphtheriae
Lineage: 0_0
Sublineage: SL80
Clonal group: ClG80
Genetic cluster: GC434

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Prefix	Threshold	Matching isolates
0_0_42_0_2_0	8	1
0_0_42_0_2_0_0	4	1
0_0_42_0_2_0_0_0	2	1
0_0_42_0_2_0_0_0_0	1	1
0_0_42_0_2_0_0_0_0_0	0	1
0	1220	2380
0_0	1035	2162
0_0_42	500	4
0_0_42_0	55	4
0_0_42_0_2	25	1
0_0_42_0_2_0	8	1
0_0_42_0_2_0_0	4	1
0_0_42_0_2_0_0_0	2	1
0_0_42_0_2_0_0_0_0	1	1
0_0_42_0_2_0_0_0_0_0	0	1

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	19 (4 isolates)	SL: 508
Genomic_cluster	cgMLST	Single-linkage	25	experimental	19 (3 isolates)
Sublineage	cgMLST	Single-linkage	500	experimental	19 (4 isolates)	SL: 508
Genomic_cluster	cgMLST	Single-linkage	25	experimental	19 (3 isolates)

Schemes and loci

All loci

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