Full information on isolate KL0895 (id:768)
Projects
Provenance/primary metadata
- id
- 768
- isolate
- KL0895
- species
- C. diphtheriae
- biovar
- Gravis
- isolation year
- 2017
- city
- Hamburg
- country
- Germany
- continent
- Europe
- travel history
- Sri Lanka
- host
- Human
- source
- foot
- infection or disease
- wound infection
- accession number
- PRJNA416260
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 14 updates show details
- embargo history
- show details
- date entered
- 2018-07-13
- datestamp
- 2025-07-17
- outbreak or sporadic
- Sporadic
Publications (2)
- Dangel A, Berger A, Konrad R, Bischoff H, Sing A (2018). Geographically Diverse Clusters of Nontoxigenic Corynebacterium diphtheriae Infection, Germany, 2016-2017. Emerg Infect Dis 24:1239-1245
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 32
- total length
- 2,441,483 bp
- max length
- 433,271 bp
- mean length
- 76,297 bp
- N50
- 235,323
- L50
- 4
- N90
- 48,375
- L90
- 14
- N95
- 24,271
- L95
- 17
- %GC
- 53.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,383
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_209_0_2_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL295
- Clonal group
- ClG295
- Genetic cluster
- GC809
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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