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Full information on isolate KL0476 (id:721)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
721
isolate
KL0476
species
C. diphtheriae
biovar
Gravis
isolation year
2013
city
Hamburg
country
Germany
continent
Europe
travel history
Not documented
host
Human
source
foot
infection or disease
wound infection
accession number
PRJNA416260
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
15 updates show details
embargo history
show details
date entered
2018-07-13
datestamp
2025-07-17
outbreak or sporadic
Sporadic

Publications (2)

  • Dangel A, Berger A, Konrad R, Bischoff H, Sing A (2018). Geographically Diverse Clusters of Nontoxigenic Corynebacterium diphtheriae Infection, Germany, 2016-2017. Emerg Infect Dis 24:1239-1245
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
35
total length
2,547,289 bp
max length
481,399 bp
mean length
72,780 bp
N50
201,538
L50
5
N90
35,612
L90
16
N95
25,853
L95
20
%GC
53.55
Ns
0
gaps
0
loci tagged
1,387

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_209_0_1_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL295
Clonal group
ClG295
Genetic cluster
GC678

Show all thresholds

PrefixThresholdMatching isolates
0_0_209_0_1_081
0_0_209_0_1_0_041
0_0_209_0_1_0_0_021
0_0_209_0_1_0_0_0_011
0_0_209_0_1_0_0_0_0_001
012202380
0_010352162
0_0_20950014
0_0_209_0556
0_0_209_0_1251
0_0_209_0_1_081
0_0_209_0_1_0_041
0_0_209_0_1_0_0_021
0_0_209_0_1_0_0_0_011
0_0_209_0_1_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental41 (13 isolates)
SL: 295
SublineagecgMLSTSingle-linkage500experimental41 (13 isolates)
SL: 295
Genomic_clustercgMLSTSingle-linkage25experimental407 (1 isolate)

Schemes and loci

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Tools

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