Full information on isolate 20241216_DIFT338 (id:6429)
Provenance/primary metadata
- id
- 6429
- isolate
- 20241216_DIFT338
- alias
- DIFT338
- species
- C. diphtheriae
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2024
- city
- 1000
- country
- Belgium
- continent
- Europe
- state or locality
- Brussels-Capital Region
- travel history
- Unknown
- host
- Human
- source
- Skin lesion
- infection or disease
- Skin lesion
- epidemic cluster
- /
- sender
- Helena Martini, Laboratorium Microbiologie, Universitair Ziekenhuis Brussel, Belgium
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2024-12-19
- datestamp
- 2025-07-18
Sequence bin
- method
- Illumina
- contigs
- 43
- total length
- 2,425,607 bp
- max length
- 240,147 bp
- mean length
- 56,410 bp
- N50
- 128,303
- L50
- 8
- N90
- 69,226
- L90
- 18
- N95
- 26,916
- L95
- 21
- %GC
- 53.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,314
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_164_0_3_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL447
- Clonal group
- ClG447
- Genetic cluster
- GC1122
Schemes and loci
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