Full information on isolate 240785 (id:6423)
Provenance/primary metadata
- id
- 6423
- isolate
- 240785
- species
- C. diphtheriae
- tox gene PCR
- Positive
- tox production Elek
- Negative
- isolation year
- 2024
- country
- Canada
- continent
- North America
- travel history
- unknown
- host
- Homo sapiens
- source
- swab ear
- sender
- anne-marie Bernier, Université de Saint-Boniface, Winnipeg, Manitoba, Canada
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2024-12-19
- datestamp
- 2026-05-22
Sequence bin
- method
- Illumina
- contigs
- 27
- total length
- 2,399,409 bp
- max length
- 567,962 bp
- mean length
- 88,867 bp
- N50
- 195,321
- L50
- 4
- N90
- 40,311
- L90
- 13
- N95
- 27,503
- L95
- 17
- %GC
- 53.60
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,315
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_192_1_0_11_1_0_0_1
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL50
- Clonal group
- ClG50
- Genetic cluster
- GC11
| Prefix | Threshold | Matching isolates |
|---|---|---|
| 0_0_192_1_0_11 | 8 | 3 |
| 0_0_192_1_0_11_1 | 4 | 2 |
| 0_0_192_1_0_11_1_0 | 2 | 2 |
| 0_0_192_1_0_11_1_0_0 | 1 | 2 |
| 0_0_192_1_0_11_1_0_0_1 | 0 | 1 |
| 0 | 1220 | 2242 |
| 0_0 | 1035 | 2024 |
| 0_0_192 | 500 | 84 |
| 0_0_192_1 | 55 | 72 |
| 0_0_192_1_0 | 25 | 32 |
| 0_0_192_1_0_11 | 8 | 3 |
| 0_0_192_1_0_11_1 | 4 | 2 |
| 0_0_192_1_0_11_1_0 | 2 | 2 |
| 0_0_192_1_0_11_1_0_0 | 1 | 2 |
| 0_0_192_1_0_11_1_0_0_1 | 0 | 1 |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Analysis:
Export: