Full information on isolate 44883 (id:6189)
Provenance/primary metadata
- id
- 6189
- isolate
- 44883
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2023
- country
- Canada
- continent
- North America
- state or locality
- Ontario
- travel history
- Not documented
- host
- Homo sapiens
- source
- Ankle
- sender
- Lisa McTaggart, Public Health Ontario, Canada
- curator
- Auto Tagger
- update history
- 7 updates show details
- embargo history
- show details
- date entered
- 2024-10-02
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 36
- total length
- 2,367,486 bp
- max length
- 411,345 bp
- mean length
- 65,764 bp
- N50
- 160,217
- L50
- 5
- N90
- 37,874
- L90
- 15
- N95
- 23,804
- L95
- 19
- %GC
- 53.45
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,313
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_4_1_15_0_0_1_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG32
- Genetic cluster
- GC28
Schemes and loci
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