Full information on isolate 43936 (id:6164)
Provenance/primary metadata
- id
- 6164
- isolate
- 43936
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- Canada
- continent
- North America
- state or locality
- Ontario
- travel history
- Not documented
- host
- Homo sapiens
- source
- Other
- sender
- Lisa McTaggart, Public Health Ontario, Canada
- curator
- Auto Tagger
- update history
- 7 updates show details
- embargo history
- show details
- date entered
- 2024-10-02
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 43
- total length
- 2,369,583 bp
- max length
- 326,799 bp
- mean length
- 55,107 bp
- N50
- 145,941
- L50
- 6
- N90
- 37,102
- L90
- 18
- N95
- 25,980
- L95
- 22
- %GC
- 53.46
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,313
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_4_1_14_0_0_2_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG32
- Genetic cluster
- GC28
Schemes and loci
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