Full information on isolate 41213 (id:6139)
Provenance/primary metadata
- id
- 6139
- isolate
- 41213
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2021
- country
- Canada
- continent
- North America
- state or locality
- Ontario
- travel history
- Not documented
- host
- Homo sapiens
- source
- Ulcer
- sender
- Lisa McTaggart, Public Health Ontario, Canada
- curator
- Auto Tagger
- update history
- 7 updates show details
- embargo history
- show details
- date entered
- 2024-10-02
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 43
- total length
- 2,369,942 bp
- max length
- 217,919 bp
- mean length
- 55,115 bp
- N50
- 123,310
- L50
- 8
- N90
- 31,245
- L90
- 21
- N95
- 22,644
- L95
- 26
- %GC
- 53.46
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,313
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_4_1_14_0_0_1_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG32
- Genetic cluster
- GC28
Schemes and loci
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