Full information on isolate 41156 (id:6112)
Provenance/primary metadata
- id
- 6112
- isolate
- 41156
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2019
- country
- Canada
- continent
- North America
- state or locality
- Ontario
- travel history
- Not documented
- host
- Homo sapiens
- source
- Other
- sender
- Lisa McTaggart, Public Health Ontario, Canada
- curator
- Auto Tagger
- update history
- 6 updates show details
- embargo history
- show details
- date entered
- 2024-10-02
- datestamp
- 2025-07-18
Sequence bin
- method
- Illumina
- contigs
- 50
- total length
- 2,397,067 bp
- max length
- 202,299 bp
- mean length
- 47,942 bp
- N50
- 116,699
- L50
- 9
- N90
- 44,462
- L90
- 23
- N95
- 21,564
- L95
- 27
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,313
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_9_1_8_5_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG5
- Genetic cluster
- GC23
Schemes and loci
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Tools
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