Full information on isolate CIP107579 (id:603)
Projects
Provenance/primary metadata
- id
- 603
- isolate
- CIP107579
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 1993
- country
- Russia
- continent
- Asia
- travel history
- Not documented
- host
- Human
- source
- carrier
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 11 updates show details
- embargo history
- show details
- date entered
- 2018-02-20
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 42
- total length
- 2,360,669 bp
- max length
- 346,764 bp
- mean length
- 56,207 bp
- N50
- 104,938
- L50
- 6
- N90
- 31,019
- L90
- 21
- N95
- 22,743
- L95
- 25
- %GC
- 53.45
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,389
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_6_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG10073
- Genetic cluster
- GC713
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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