Full information on isolate 8db3046d (id:5988)
Projects
This isolate is a member of the following project:
- 2023_EuropeanWideReemergence_followup
- EU isolates 2023 (Hoefer et al.)
Provenance/primary metadata
- id
- 5988
- isolate
- 8db3046d
- species
- C. diphtheriae
- tox gene PCR
- Positive
- isolation year
- 2023
- country
- Switzerland
- continent
- Europe
- travel history
- Unknown
- host
- Human
- accession number
- ERS19345114
- sender
- Helena Seth-Smith, University of Zurich
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 5 updates show details
- date entered
- 2024-09-05
- datestamp
- 2024-09-17
Sequence bin
- method
- Illumina
- contigs
- 46
- total length
- 2,437,754 bp
- max length
- 508,865 bp
- mean length
- 52,995 bp
- N50
- 402,424
- L50
- 3
- N90
- 51,992
- L90
- 12
- N95
- 26,000
- L95
- 15
- %GC
- 53.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,312
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_21_0_4_0_0_0_2_1
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL377
- Clonal group
- ClG377
- Genetic cluster
- GC2
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: