Full information on isolate 20231222_DIFT300 (id:5969)
Provenance/primary metadata
- id
- 5969
- isolate
- 20231222_DIFT300
- alias
- DIFT300
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2023
- city
- 1000
- country
- Belgium
- continent
- Europe
- state or locality
- Brussels-Capital Region
- travel history
- Unknown
- host
- Human
- source
- Skin lesion
- infection or disease
- Skin lesion
- comments
- Homeless, IV drug user
- epidemic cluster
- /
- sender
- Helena Martini
- curator
- Helena Martini, Laboratorium Microbiologie, Universitair Ziekenhuis Brussel, Belgium (E-mail: Helena.Martini@uzbrussel.be)
- update history
- 15 updates show details
- embargo history
- show details
- date entered
- 2024-08-02
- datestamp
- 2026-07-09
Sequence bin
- method
- Illumina
- contigs
- 18
- total length
- 2,450,447 bp
- max length
- 515,934 bp
- mean length
- 136,136 bp
- N50
- 277,324
- L50
- 4
- N90
- 117,745
- L90
- 9
- N95
- 52,409
- L95
- 11
- %GC
- 53.76
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,316
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_5_0_4_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_5
- Sublineage
- SL100
- Clonal group
- ClG10338
- Genetic cluster
- GC1110
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Third party:
Analysis: