Full information on isolate 20230728_DIFT252 (id:5961)
Provenance/primary metadata
- id
- 5961
- isolate
- 20230728_DIFT252
- alias
- DIFT252
- species
- C. ulcerans
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2023
- city
- 1471
- country
- Belgium
- continent
- Europe
- state or locality
- Walloon Brabant
- travel history
- No
- host
- Human
- source
- Skin lesion
- infection or disease
- Lower limb lesion
- other source info
- Diabetic
- epidemic cluster
- /
- sender
- Helena Martini
- curator
- Helena Martini, Laboratorium Microbiologie, Universitair Ziekenhuis Brussel, Belgium (E-mail: Helena.Martini@uzbrussel.be)
- update history
- 13 updates show details
- embargo history
- show details
- date entered
- 2024-08-02
- datestamp
- 2026-07-09
Sequence bin
- method
- Illumina
- contigs
- 13
- total length
- 2,551,170 bp
- max length
- 441,668 bp
- mean length
- 196,244 bp
- N50
- 300,150
- L50
- 4
- N90
- 223,929
- L90
- 7
- N95
- 135,314
- L95
- 8
- %GC
- 53.34
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,635
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 7 (58 isolates) | CG: 332 |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 1 (254 isolates) | SL: 331 |
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 7 (58 isolates) | CG: 332 |
| Genomic_cluster_ulcerans | cgMLST_ulcerans | Single-linkage | 25 | experimental | 475 (1 isolate) | |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 1 (254 isolates) | SL: 331 |
Schemes and loci
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