Full information on isolate CIPKHG8056 (id:596)
Projects
Provenance/primary metadata
- id
- 596
- isolate
- CIPKHG8056
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 1951
- country
- France
- continent
- Europe
- travel history
- Not documented
- host
- Human
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 12 updates show details
- embargo history
- show details
- date entered
- 2018-02-20
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 25
- total length
- 2,440,182 bp
- max length
- 347,840 bp
- mean length
- 97,608 bp
- N50
- 300,106
- L50
- 4
- N90
- 72,511
- L90
- 11
- N95
- 29,842
- L95
- 14
- %GC
- 53.49
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,403
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_0_0_0_0_1_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL8
- Clonal group
- ClG8
- Genetic cluster
- GC29
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 1 (88 isolates) | SL: 8 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 1 (13 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 1 (88 isolates) | SL: 8 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 1 (13 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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